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DESCRIPTION
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DESCRIPTION
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Package: EpiNow
Type: Package
Title: Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
Version: 0.3.0
Authors@R: c(
person(given = "Sam Abbott",
role = c("aut", "cre"),
email = "contact@samabbott.co.uk",
comment = c(ORCID = "0000-0001-8057-8037")),
person("Joel", "Hellewell",
email = "joel.hellewell@lshtm.ac.uk",
role = c("aut"),
comment = c(ORCID = "0000-0003-2683-0849")),
person("James", "Munday",
email = "james.munday@lshtm.ac.uk",
role = c("aut")),
person("Robin", "Thompson",
email = "robin.thompson@lshtm.ac.uk",
role = c("aut")),
person("Sebastian", "Funk",
email = "sebastian.funk@lshtm.ac.uk",
role = c("aut")))
Description: To identify changes in the reproduction number, rate of spread,
and doubling time during the course of outbreaks whilst accounting
for potential biases due to delays in case reporting.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
EpiEstim,
EpiSoon,
data.table,
purrr,
Rcpp (>= 0.12.0),
rstan (>= 2.18.1),
rstantools (>= 2.0.0),
methods,
loo,
HDInterval,
future.apply,
stringr,
lubridate,
ggplot2,
cowplot,
patchwork,
R.devices,
truncnorm
Suggests:
dplyr,
tidyr,
knitr,
kableExtra,
here,
magrittr,
countrycode,
rnaturalearth,
rnaturalearthdata,
rnaturalearthhires,
rmarkdown
Additional_repositories:
https://epiforecasts.io/drat/,
http://packages.ropensci.org/
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0
Biarch: true
Depends:
R (>= 3.4.0)
LinkingTo:
BH (>= 1.66.0),
Rcpp (>= 0.12.0),
RcppEigen (>= 0.3.3.3.0),
rstan (>= 2.18.1),
StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
VignetteBuilder: knitr