workflow/options vignettes

[sbfnk]

Adds two vignettes, one on the general workflow for working with the package (which could be potentially expanded with more examples showing how the different models can feed into each other) and one to illustrate the various options for running estimate_infections in preparation from moving them out of the examples to address #430.

Vignettes are precompiled so as to not require re-rendering all the time in GitHub actions.

[seabbs]

Nice stuff. Just a quick skim

[jamesmbaazam]

Thanks, Seb. I think these vignettes nicely highlight the various available models, and how to set up and run the models. The vignettes will be useful to most users.

I wonder if dist_spec_plus() would benefit from taking an optional label argument for the two distributions and passed on to the printing method for identifying the corresponding delays.

[sbfnk]

Thanks, @jamesmbaazam for the suggestions! I've edited the corresponding .orig files and recompiled the vignettes (How to precompute package vignettes or pkgdown articles).

I wonder if dist_spec_plus() would benefit from taking an optional label argument for the two distributions and passed on to the printing method for identifying the corresponding delays.

Tricky as this would normally not be called by the user directly (instead, the user would use +). This could be reconsidered when switching to a more general observation model as discussed in #371

[jamesmbaazam]

Thanks, @jamesmbaazam for the suggestions! I've edited the corresponding .orig files and recompiled the vignettes (How to precompute package vignettes or pkgdown articles).

Thanks for this. Now I know. I've never had to deal with this.

[seabbs]

it should likely be added to the contributing guide if it isn't already (I think it isn't)