Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

make test data larger to include peaks and motifs #35

Open
sreichl opened this issue Jan 25, 2024 · 1 comment
Open

make test data larger to include peaks and motifs #35

sreichl opened this issue Jan 25, 2024 · 1 comment
Assignees
Labels
documentation Improvements or additions to documentation enhancement New feature or request

Comments

@sreichl
Copy link
Collaborator

sreichl commented Jan 25, 2024

so that the whole workflow can be tested using the test data

something like this
If working with FASTQ data, a straightforward way
to generate a small test set is to subsample the first million lines of a file (first 250,000 reads) as follows: head -n 1000000 FASTQ FILE.fq > test fastq.fq

or just sampling more reads

@sreichl sreichl self-assigned this Jan 25, 2024
@sreichl sreichl added documentation Improvements or additions to documentation enhancement New feature or request labels Feb 10, 2024
@sreichl
Copy link
Collaborator Author

sreichl commented Apr 25, 2024

could be obsolete once the ATAC-seq RECIPE is provided.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
documentation Improvements or additions to documentation enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant