@epigen

Computational Epigenetics

Computational Epigenetics Research and Software

Pinned repositories

  1. microtest

    Small test data from various data types for testing pipelines

    Shell 2

  2. open_pipelines

    Pipelines for NGS data preprocessing by the Bock lab and friends

    Python 4 3

  • Code and metadata for glioblastoma matched analysis

    R Updated Aug 7, 2018
  • Git working Repo synced to the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html

    R 1 4 Updated Aug 1, 2018
  • Pipelines for NGS data preprocessing by the Bock lab and friends

    Python 4 3 Updated Jul 31, 2018
  • Small test data from various data types for testing pipelines

    Shell 2 Updated Jun 14, 2018
  • RnBeads website and online resources

    HTML 1 MIT Updated Jun 4, 2018
  • Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

    Python 11 4 Updated Feb 22, 2018
  • Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)

    Python 7 4 GPL-3.0 Updated Nov 10, 2017
  • Data analysis scripts for Schmidl et. al, 2015 (doi:10.1038/nmeth.3542)

    Python 4 Updated Jan 6, 2017
  • Methylation calling script for bisulfite sequencing

    Python Updated Dec 8, 2016
  • R Updated Oct 19, 2016
  • Supplementary code repository accompanying the BLUEPRINT benchmark study of locus-specific DNA methylation assays.

    R 2 MIT Updated Jun 29, 2016