Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Peak count stat for SPP #6

Open
vreuter opened this issue Aug 24, 2017 · 2 comments
Open

Peak count stat for SPP #6

vreuter opened this issue Aug 24, 2017 · 2 comments

Comments

@vreuter
Copy link
Contributor

vreuter commented Aug 24, 2017

I can read through it if this is unknown, but does anyone happen to be aware if the SPP peak calling RScript handles responsibility for the task of reporting peak count? When MACS2 is the caller, this is done post-hoc with report_dict, but not when it's SPP.
@vreuter
Copy link
Contributor Author

vreuter commented Aug 24, 2017

Guessing not, since the stats file isn't passed to the NGSTK function that executes the script, but I guess the script could assume a "stats.tsv" in the outputDir and append there...

@vreuter
Copy link
Contributor Author

vreuter commented Aug 24, 2017 •
edited
Loading

Going to proceed for now as if it doesn't report it, as I don't find "stats.tsv" in the script...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@vreuter