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Document Newton solver #60

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pratikunterwegs opened this issue Oct 4, 2022 · 0 comments · Fixed by #65
Closed

Document Newton solver #60

pratikunterwegs opened this issue Oct 4, 2022 · 0 comments · Fixed by #65
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Cleanup Clean up files or code for readability. Documentation Improvements or additions to documentation

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pratikunterwegs added a commit that referenced this issue Oct 4, 2022
@pratikunterwegs
Document Newton solver, WIP #60
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@pratikunterwegs pratikunterwegs mentioned this issue Oct 6, 2022
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pratikunterwegs added a commit that referenced this issue Oct 7, 2022
@pratikunterwegs
Document Newton solver, WIP #60
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@pratikunterwegs pratikunterwegs self-assigned this Oct 7, 2022
@pratikunterwegs pratikunterwegs added Documentation Improvements or additions to documentation Cleanup Clean up files or code for readability. labels Oct 7, 2022
pratikunterwegs added a commit that referenced this issue Oct 11, 2022
@pratikunterwegs @Bisaloo
Final size with risk groups using Newton solver (#65)
41ef432 
* Implement Newton solver R, fixes #55

* Tests for Newton solver, fixes #56, #57, #58, #59

* Add iterative option to final_size_grps tests

* Add solver option to final_size_grps, fixes #62

* Document Newton solver, WIP #60

* Start with small guess final size Newton solver, WIP #55

* Add and correct tests for final_size_grps and/with Newton solver

* Update final_size_grps conditions for Newton solver

* Update documentation, add Matrix import, allow Codecov comments

* Check final_size_grps is correct with Polymod data, both solvers

* Outer prod in Newton solver, correct r0=12 test

* Use codecov yaml from codecov, WIP to allow bot comments

* Newton solver does not need p_susceptibility

* Correct return error

* Add test for solver equivalence, fixes #67

* Remove p_susceptibility return (1.0s) and multiplication

* Remove unused function arguments

* Match.args for solver, use control list for solver settings

* Update documentation

* Update tests to omit p_susc in solvers

* Update documentation with control list in example

* Correct documentation with control in fn call

* Remove excess brackets R/iterative_solver.R

Co-authored-by: Hugo Gruson <Bisaloo@users.noreply.github.com>

* Update finalsize_risk_grps docu w/ default solver opt

Co-authored-by: Hugo Gruson <Bisaloo@users.noreply.github.com>

* Rm control checking, add examples w/ control

* Add error > tolerance warnings in solvers

* Add tests for error/tolerance warnings

* Update documentation

Co-authored-by: Hugo Gruson <Bisaloo@users.noreply.github.com>
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Cleanup Clean up files or code for readability. Documentation Improvements or additions to documentation
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Final size with Newton solver
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Final size with risk groups using Newton solver epiverse-trace/finalsize
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