Automatic readme update

README.md

@@ -1,49 +1,49 @@
 
-## *{{ packagename }}*: An R package with tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/vaccineff.png" align="right" width="130"/>
+## *vaccineff*: An R package with tools for estimating vaccine effectiveness and vaccine related metrics <img src="man/figures/vaccineff.png" align="right" width="130"/>
 
 <!-- badges: start -->
 
 [![License:
 MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/license/mit/)
-[![R-CMD-check](https://github.com/%7B%7B%20gh_repo%20%7D%7D/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/%7B%7B%20gh_repo%20%7D%7D/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/epiverse-trace/vaccineff/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/epiverse-trace/vaccineff/actions/workflows/R-CMD-check.yaml)
 [![Codecov test
-coverage](https://codecov.io/gh/%7B%7B%20gh_repo%20%7D%7D/branch/main/graph/badge.svg)](https://app.codecov.io/gh/%7B%7B%20gh_repo%20%7D%7D?branch=main)
+coverage](https://codecov.io/gh/epiverse-trace/vaccineff/branch/main/graph/badge.svg)](https://app.codecov.io/gh/epiverse-trace/vaccineff?branch=main)
 [![Project Status: WIP – Initial development is in progress, but there
 has not yet been a stable, usable release suitable for the
 public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
 [![CRAN
-status](https://www.r-pkg.org/badges/version/%7B%7B%20packagename%20%7D%7D)](https://CRAN.R-project.org/package=%7B%7B%20packagename%20%7D%7D)
+status](https://www.r-pkg.org/badges/version/vaccineff)](https://CRAN.R-project.org/package=vaccineff)
 [![lifecycle-experimental](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-experimental.svg)](https://www.reconverse.org/lifecycle.html#concept)
 
 <!-- badges: end -->
 
-*{{ packagename }}* is developed at [Pontificia Universidad
+*vaccineff* is developed at [Pontificia Universidad
 Javeriana](https://www.javeriana.edu.co/inicio) as part of the
 [Epiverse-TRACE initiative](https://data.org/initiatives/epiverse/).
 
-*{{ packagename }}* is an R package that offers tools for estimating
-vaccine effectiveness, using a series of epidemiological designs
-including cohort studies, test-negative case-control, and screening
-methods ([Torvaldsen and McIntyre 2002](#ref-torvaldsen2002)). The
-current version of the package provides a set of features for preparing,
+*vaccineff* is an R package that offers tools for estimating vaccine
+effectiveness, using a series of epidemiological designs including
+cohort studies, test-negative case-control, and screening methods
+([Torvaldsen and McIntyre 2002](#ref-torvaldsen2002)). The current
+version of the package provides a set of features for preparing,
 visualizing, and managing cohort data, estimating vaccine effectiveness,
 and assessing the performance of the models. Test-negative design and
 screening method will be included in future versions.
 
 ## Installation
 
-The current development version of *{{ packagename }}* can be installed
-from [GitHub](https://github.com/) using the `pak` package.
+The current development version of *vaccineff* can be installed from
+[GitHub](https://github.com/) using the `pak` package.
 
 ``` r
 if(!require("pak")) install.packages("pak")
-pak::pak("{{ gh_repo }}")
+pak::pak("epiverse-trace/vaccineff")
 ```
 
 ## Quick start
 
-*{{ packagename }}* provides a minimal cohort dataset that can be used
-to test out the models.
+*vaccineff* provides a minimal cohort dataset that can be used to test
+out the models.
 
 ``` r
 # Load example `cohortdata` included in the package
@@ -65,21 +65,21 @@ head(cohortdata, 5)
 
 ## Package vignettes
 
-More details on how to use *{{ packagename }}* can be found in the
-[online documentation as package
-vignettes](https://epiverse-trace.github.io/%7B%7B%20packagename%20%7D%7D/),
-in the article “Get Started with vaccineff”.
+More details on how to use *vaccineff* can be found in the [online
+documentation as package
+vignettes](https://epiverse-trace.github.io/vaccineff/), in the article
+“Get Started with vaccineff”.
 
 ## Help
 
 To report a bug or to request a new feature please open an
-[issue](https://github.com/%7B%7B%20gh_repo%20%7D%7D/issues/new/choose).
+[issue](https://github.com/epiverse-trace/vaccineff/issues/new/choose).
 
 ## Contribute
 
-Contributions to *{{ packagename }}* are welcomed. Please follow the
-[package contributing
-guide](https://github.com/%7B%7B%20gh_repo%20%7D%7D/blob/main/.github/CONTRIBUTING.md).
+Contributions to *vaccineff* are welcomed. Please follow the [package
+contributing
+guide](https://github.com/epiverse-trace/vaccineff/blob/main/.github/CONTRIBUTING.md).
 
 Contributors to the project include:
 
@@ -98,14 +98,15 @@ Abril-Bermúdez](https://github.com/fsabrilb)
 
 ## Code of conduct
 
-Please note that the *{{ packagename }}* project is released with a
-[Contributor Code of
+Please note that the *vaccineff* project is released with a [Contributor
+Code of
 Conduct](https://github.com/epiverse-trace/.github/blob/main/CODE_OF_CONDUCT.md).
 By contributing to this project, you agree to abide by its terms.
 
 ## References
 
-<div id="refs" class="references csl-bib-body hanging-indent">
+<div id="refs" class="references csl-bib-body hanging-indent"
+entry-spacing="0">
 
 <div id="ref-torvaldsen2002" class="csl-entry">