Skip to content

Issues: epurdom/clusterExperiment

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

53 Open 212 Closed
53 Open 212 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ERROR: dependency ‘howmany’ is not available for package ‘clusterExperiment’
#271 opened Apr 25, 2024 by aarzalluz
Seurat Custom Functions
#270 opened Jan 29, 2024 by pshukla63
1
Installation of clusterexperiment fails on 3.14 (BiocManager 1.30.17), R 4.1.3 (2022-03-10) MacOS
#268 opened May 3, 2022 by JesseRop
MinSize in merging step enhancement
#264 opened Mar 11, 2019 by epurdom
calling RSEC() function error: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘primaryCluster’ for signature ‘"NULL"’
#263 opened Jan 19, 2019 by siyao-liu
5
Fix clusterContrasts so can give whichCluster arg
#258 opened Oct 10, 2018 by epurdom
Function for finding correlation between cluster centroids enhancement
#252 opened Jun 28, 2018 by epurdom
Make function to check if two clusterings are a permutation of each other enhancement
#251 opened Jun 28, 2018 by epurdom
Add violin plot functionality to plotFeatureBoxplot enhancement
#248 opened Jun 6, 2018 by epurdom
plotDendrogram takes a LONG time with large number of cells enhancement
#247 opened May 29, 2018 by epurdom
speed up plotClusters by moving to C++ enhancement
#245 opened May 18, 2018 by epurdom
Store counts as integers enhancement
#238 opened Mar 15, 2018 by epurdom
2
use fastcluster for hierarchical clustering enhancement
#237 opened Mar 15, 2018 by epurdom
5
plotHeatmap not working with NMF development version
#235 opened Jan 26, 2018 by rufletch
16
Sort the values of the cluster names in legend of plotDendrogram enhancement
#230 opened Oct 12, 2017 by epurdom
Using distFun in clusterMany shouldn't use global.env() bug
#229 opened Oct 6, 2017 by epurdom
Use pheatmap instead of aheatmap? enhancement
#224 opened Sep 29, 2017 by epurdom
4
inefficient in findBestK=TRUE enhancement
#223 opened Sep 29, 2017 by epurdom
implement gap statistic enhancement
#222 opened Sep 29, 2017 by epurdom
getClusterManyParams allows to subset enhancement
#218 opened Sep 25, 2017 by epurdom
argument "breaks" in plotHeatmap function for negative values
#215 opened Jul 20, 2017 by fperraudeau
1
dimReduce and scaling
#213 opened Jun 30, 2017 by epurdom
2
only show some factors in legend for plotHeatmap enhancement Issue that depends on another package
#212 opened Jun 24, 2017 by epurdom
plotClusters have a heatmap option for ordering of samples enhancement
#211 opened Jun 24, 2017 by epurdom
in plotBarplot with 1 cluster not give label to clusters bug
#209 opened Jun 21, 2017 by epurdom
ProTip! Mix and match filters to narrow down what you’re looking for.