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Fixed a minor bug with strange chromosome names and removed unused classes.

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  • fixed a parallelization related bug when using smile
  • fixed a bug with ucsc genomes (chrM was not handled correctly)
  • many other minor improvements
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This is the release version of Price used in the submitted manuscript

Caution: There was a bug due to an update of htsjdk, which prevents loading bam files in some cases. (We did not notice that as we use our internal CIT format for all analyses). Use the most recent version instead!

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