The goal of this codebase is to provide a lightweight set of functions for working with data from multiple simultaneously acquired Neuropixels and associated histology data. Relies on output formats and folder structures from SpikeGLX, Kilosort and Ecephys. Optionally uses Bombcell output for cell quality screening. Uses the Allen SDK for core anatomical functionality. Also uses some SpikeGLX utility functionality from the IBL codebase.
Please see notebook files for examples of:
- computing and exporting traced histology tracts
- loading, combining, and working with data from multiple Neuropixels
If you use this code, please cite our paper.