Convert genetic variants to minimal representation
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README.md Better reflects all that is in this repo now Apr 25, 2014
benchmark.py
check-python-performance.bash initial commit Apr 23, 2014
lookup_var.py now support direct input of multi-allelic sites May 2, 2014
minimal-representation.r changed underscore to hyphen Jul 19, 2014
minimal_representation.py cast pos to int in case people pass strings direct from VCF Aug 27, 2014
minimal_representation.pyc initial commit Apr 23, 2014
minrep_file.py needed for HGMD project Jul 19, 2014
na12878-validation-pandas.py
na12878-validation.bash initial commit Apr 23, 2014
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normalize.py line break in QC output Jul 31, 2015
test_lookup_var.bash
test_minimal_representation.py

README.md

Convert variants at multi-allelic sites to their 'minimal representation', i.e. how they would be represented if they were the only allele present at the site.

This was forked from xBrowse and will eventually be integrated back in.

See explanation of this code and important use cases in this CureFFI.org blog post.