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ericmjl committed Apr 9, 2024
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Expand Up @@ -228,14 +228,43 @@ <h3 class="text-center">
<div id="experience-details">


<div class="card box-shadow transition" id="Moderna Therapeutics-card">
<div class="card box-shadow transition" id="Moderna Inc.-card">
<div class="row g-0">
<div class="col-md-3 bg-green">
<div class="card-body">
<h5 class="card-title">Senior Principal Data Scientist (Research)</h5>
<small>Moderna Inc.</small>
<br>
<small>April 2024-Present, Cambridge MA
</small>
</div>
</div>
<div class="col-md-9">
<div class="card-body">
<h6>Accomplishments and Responsibilities:</h6>
<p class="card-text"><ul>
<li>Data Science lead in Moderna's Digital for Research organization supporting Moderna's Research efforts, covering problems in mRNA design, protein engineering, and lipid nanoparticle chemistry.</li>
<li>Our team accelerates science to the speed of thought and quantifies the previously unquantified.</li>
<li>Our team of six builds API-callable, artificial intelligence-powered software products for use AI library design, computer vision, and custom software and algorithm development.</li>
<li>Co-organizer of work-in-progress seminar series to encourage Pixar-like early stage discussion of work and cross-functional collaboration.</li>
<li>Primary maintainer of internal deployment of AlphaFold.</li>
</ul></p>
</div>
</div>
</div>
</div>
<br>



<div class="card box-shadow transition" id="Moderna Inc.-card">
<div class="row g-0">
<div class="col-md-3 bg-green">
<div class="card-body">
<h5 class="card-title">Principal Data Scientist (Research)</h5>
<small>Moderna Therapeutics</small>
<small>Moderna Inc.</small>
<br>
<small>July 2021-Present, Cambridge MA
<small>July 2021-March 2024, Cambridge MA
</small>
</div>
</div>
Expand All @@ -245,7 +274,7 @@ <h6>Accomplishments and Responsibilities:</h6>
<p class="card-text"><ul>
<li>Data Science lead in Moderna's DSAI group supporting Moderna's Research efforts, covering problems in mRNA design, protein engineering, and lipid nanoparticle chemistry.</li>
<li>Our team of six supports projects in AI library design, computer vision, and custom software and algorithm development that saved millions of dollars in annual FTE costs through automating manual research workflows and enriching the data obtained from existing data.</li>
<li>Architedted and implementated standardized data science workflows within the team</li>
<li>Architected and implementated standardized data science workflows for the broader team.</li>
<li>Co-organized quarterly docathons to foster the habit of writing project documentation.</li>
<li>Core maintainer of Moderna's first open source project, <a href="https://github.com/modernatx/seqlike">SeqLike</a>.</li>
</ul></p>
Expand Down Expand Up @@ -360,7 +389,7 @@ <h5 class="card-title">Health Data Science Fellow</h5>
<div class="card-body">
<h6>Accomplishments and Responsibilities:</h6>
<p class="card-text"><ul>
<li>Built <a href="https://fluforecaster.herokuapp.com">Flu Forecaster</a>, a machine learning-powered system that forecasts flu sequences six months out, to better prepare for manufacturing of vaccine strains.</li>
<li>Built <a href="https://flu-forecaster.ericmjl.com/">Flu Forecaster</a>, a machine learning-powered system that forecasts flu sequences six months out, to better prepare for manufacturing of vaccine strains.</li>
<li>Implemented a variational autoencoder (deep learning model) to learn a continuous representation of 14,455 influenza hemagglutinin protein sequences, and trained a Gaussian process model on the continuous representation to predict new flu sequences.</li>
<li>Developed interactive blog post using Flask and Bootstrap, and deployed to Heroku and GitHub.</li>
<li>Led peer workshops on <a href="https://github.com/ericmjl/minimal-flask-example">web development</a>, deep learning and <a href="https://github.com/ericmjl/pycodestyle-tutorial">code style</a>.</li>
Expand Down Expand Up @@ -502,20 +531,25 @@ <h5>Data Science</h5>
</li>

<li>
Graphein - a Python Library for Geometric Deep Learning and Network Analysis on Biomolecular Structures and Interaction Networks, 2022.
<a href="https://openreview.net/forum?id=nNof5wC9kD"><i>ICML AI4Science</i></a>
Forecasting SARS-CoV-2 spike protein evolution from small data by deep learning and regression, 2024.
<a href="https://www.frontiersin.org/articles/10.3389/fsysb.2024.1284668/full?&field=&journalName=Frontiers_in_Systems_Biology&id=1284668"><i>Frontiers in Systems Biology</i></a>
</li>

<li>
JAEGER – Hunting for Antimalarials with Generative Chemistry, 2021.
<a href="https://chemrxiv.org/engage/chemrxiv/article-details/60f5d0b888044385cfe22cdc"><i>ChemRxiv</i></a>
Graphein - a Python Library for Geometric Deep Learning and Network Analysis on Biomolecular Structures and Interaction Networks, 2022.
<a href="https://openreview.net/forum?id=nNof5wC9kD"><i>ICML AI4Science</i></a>
</li>

<li>
Machine-Directed Evolution of an Imine Reductase for Activity and Stereoselectivity, 2021.
<a href="https://pubs.acs.org/doi/10.1021/acscatal.1c02786"><i>ACS Catalysis</i></a>
</li>

<li>
JAEGER – Hunting for Antimalarials with Generative Chemistry, 2021.
<a href="https://chemrxiv.org/engage/chemrxiv/article-details/60f5d0b888044385cfe22cdc"><i>ChemRxiv</i></a>
</li>

<li>
Functional Atlas of Primary miRNA Maturation by the Microprocessor, 2020.
<a href="https://www.sciencedirect.com/science/article/pii/S1097276520307358"><i>Molecular Cell</i></a>
Expand Down

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