CNVkit for RNA-seq: import-rna -f counts not working

[bynjh007]

Hi,
I am trying to use CNVkit to infer CNV profiles from RNA-seq. Because I don't have CNV-RNA correlation data (mouse dataset), I tried to compare how much the results can be different between with and without "-c" for example TCGA data (106 samples) that you provided. But all of the log2 values in ".cnr" files for 106 samples are zero in both results (with and without "-c"). Did I miss something?
Here are my commands:
"cnvkit.py import-rna -f counts -c tcga-skcm.cnv-expr-corr.tsv -g ensembl-gene-info.hg38.tsv -o {output} --out-dir {output_dir} {input_cnt}"

"cnvkit.py import-rna -f counts -g ensembl-gene-info.hg38.tsv -o {output} --out-dir {output_dir} {input_cnt}"

input_cnt: ex) TCGA-BF-A1PU-01.txt

Thanks!
Jinhyuk

[etal]

I think the -f counts format is not working at the moment, see #425

[etal]

It looks like the -f counts format works correctly in the development version now. I'll roll another release.