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298 Open 444 Closed
298 Open 444 Closed
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Issues list

Unable to use fix without antitarget file for WGS samples
#894 opened Jul 2, 2024 by GACGAMA
Improper post-processing of segment [bug]
#893 opened Jul 1, 2024 by GACGAMA
Getting BAF and allelic imbalance in export vcf
#892 opened Jun 26, 2024 by GACGAMA
Unable to produce .cnr files
#891 opened Jun 24, 2024 by nithishak
2
Installation error
#890 opened Jun 22, 2024 by mikewojnowicz
2
No Results
#889 opened Jun 19, 2024 by rmormando
1
how to install the cnvkit v0.9.11 by the tar.gz source
#887 opened Jun 14, 2024 by litun-fkby
Running CNVkit with VCF files
#886 opened Jun 10, 2024 by GACGAMA
How to merge vcfs of different samples?
#885 opened Jun 6, 2024 by zyxNo1
baits and target bed file
#884 opened Jun 6, 2024 by bagieutopia
The problem of false negative in male sex chromosomes
#883 opened May 31, 2024 by zhuying412
Using CNVkit with THetA2 and "Sample_paired.vcf"?
#882 opened May 13, 2024 by ngs-seqer
subprocess.CalledProcessError when segmenting bug
#881 opened May 5, 2024 by sainsachiko
3
Next release?
#877 opened Apr 9, 2024 by gabeng
10
Why are the log2 values of the chrX in the female reference I constructed mostly around 1?
#874 opened Mar 8, 2024 by zhuying412
Allow using reference fasta with reference cnn in cnvkit batch when processing crams question
#869 opened Feb 15, 2024 by IvantheDugtrio
1
Runtime Error Using CNVKit Batch
#868 opened Feb 12, 2024 by hkarakurt8742
1
cnvkit.py batch hangs on very large WGS dataset
#867 opened Feb 6, 2024 by gtollefson
pysam.idxstats
#866 opened Jan 21, 2024 by raygozag
Need Help with generating Gene level Copy Number Ratio
#865 opened Jan 18, 2024 by MaxSimonNm
1
Best practices for creating a WGS pooled reference
#864 opened Jan 16, 2024 by IvantheDugtrio
sex allocation incorrect for males; antitarget used over target
#863 opened Jan 2, 2024 by alexander-e-f-smith
Smoothing window fraction fix results in noisier data in targeted sequencing panel?
#859 opened Nov 30, 2023 by kkchau
1
Adding gene diagram to heat map
#858 opened Nov 14, 2023 by evcon131
what are the steps for Germline and Somatic CNV detection using CNVkit?
#857 opened Nov 8, 2023 by ahmadsam66
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