Significantly simplified code base with modular components that are each passed their own page's app (DashBlueprint)

components and layouts are standardized to use render function that may receive the app with or without arguments
:fire: Remove (now) unnecessary index.py
:arrow_up: Pin dash-extensions to first major release
:arrow_up: Pin dash to 2.10
:arrow_up: Add dash-mantine-components
:arrow_up: Add dash-iconify

TODO: Use tools in dash-mantine and dash-iconify libs for improved aesthetic

🎨 change default server debug setting to False

🐳 Add quotes around ports per docker-compose spec
🐛🔥 Remove extra id in norm_method_dropdown component
📝🔥 Fix typos and add details in CONTRIBUTING
🔥 Remove unused .py pages in pages dir
🎨 Update layout of home components

…onent

🎨 style buttons using dash-mantine-components

🎨🔥 Refactor refine_mags_inputs_groups by extracting selects for easier layout and styling
🎨🔥 Add icons to not found page and remove unnecessary text
🎨 rename id variables for modal and its close buttons
🎨 restyle modal

🔥 Remove settings banner component to isolate its components for easier layout and styling
🎨 Refactor marker symbols legend to use icons rather than naming shapes
🎨 Restyle save selections and settings buttons

🎨 Add selection callback for rendering contig connections cytoscape

🎨 Add REDIS_BACKEND details to .env
🎨 Add specific backend params to Serverside(..., backend=...) from automappa.data.db import {redis,file_system}_backend
🔥 Remove unnecessary serializers script in utils

🎨 Change default z-axis for 3D-scatterplot to coverage

⬆️ pin dash-mantine-components to 0.12 in env using pip rather than conda
🔥 Remove unused binning store
🎨 Change navigation to use dmc.NavLink
🎨 Add icons in page registry with blueprints

🎨 Implement data source to connect MAG refinements table
🎨 Add methods to get latest user refinements contig headers
🎨 Fix hide mag refinements toggle interaction with scatterplot2d
🎨 Add interaction b/w coverage range slider and scatterplot2d

… refactor

🎨 Hide MAG refinements switch is now disabled when there are no user refinements that have been made
🎨 Refinements table has been styled with new timestamp string and removed 'initial_cluster' column
🎨 Refinements table now only retrieves user refinements (i.e. excludes initial clusters)

- [x] save mag refinements
- [x] refinements table data & callback

🐛 Miscellaneous fixes to Refinement page updates with refinement clear interactions

🔥 Remove unused cluster col dropdown
🎨 data sources for boxplots and barplots (on MAG summary page) now use refinement_id alongside metagenome_id

🎨 Replace PreventUpdate with prevent_initial_call

🔥 Remove pandas series from boxplot figures

🎨 Replace many of the Dropdowns in Offcanvas with RadioGroup Radio options (less clicks for the user)

📝 Add documentation for tasks in CONTRIBUTING and reference tasks README.md
🥕 Add minimum working example for task submission, progress display for a task status badge
🥕 Add structure for passing queue around from __main__ to page layouts
🥕 Add task discovery for home page task in celeryconfig.py

🐳🐍 Replace base image of miniforge with mambaforge
🐛 Update Makefile to remove correct image name for celery queue

🎨 Notification system tells user of current state of tasks processing
🐛🎨 Move dcc.Store(...) within respective du.Upload component
🎨 Add tasks store for getting tasks statuses
🐰🥕 Add tasks in home for handling sample data ingestion

🎨 Add MIMAG cluster count computations
🎨 Add metadata to sample data card info
🐛 Replace na values from cluster col during contig loader pre-processing

🎨 replace Length Sum units from kbp to mbp