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Makefile.eleanor
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Makefile.eleanor
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# Makefile.in generated by automake 1.10.1 from Makefile.am.
# Makefile. Generated from Makefile.in by configure.
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.
# $Id: Makefile.am,v 1.9 2007/05/12 04:51:41 garrett Exp $
#
# AutoDock
#
# Copyright (C) 1989-2007, Garrett M. Morris, TSRI
# All Rights Reserved.
#
# AutoDock is a Trade Mark of The Scripps Research Institute.
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
#
# Makefile.am to build AutoDock 4
#
# NOTE: Must be run in the $(AUTODOCK_DEV) directory
#
# Autotools
pkgdatadir = $(datadir)/autodock
pkglibdir = $(libdir)/autodock
pkgincludedir = $(includedir)/autodock
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-unknown-linux-gnu
host_triplet = x86_64-unknown-linux-gnu
bin_PROGRAMS = autodock4$(EXEEXT)
#libad_a_SOURCES += eAllocPrepCuda.cc
am__append_1 = eMapPrepCuda.cc
# @echo "NVCC ADDED STUFF
am__append_2 = select_alloc_wrapper.o eval_wrapper.o
subdir = .
DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
$(srcdir)/Makefile.in $(top_srcdir)/configure AUTHORS COPYING \
ChangeLog INSTALL NEWS config.guess config.sub depcomp \
install-sh missing
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
configure.lineno config.status.lineno
mkinstalldirs = $(install_sh) -d
CONFIG_CLEAN_FILES =
LIBRARIES = $(noinst_LIBRARIES)
AR = ar
ARFLAGS = cru
libad_a_AR = $(AR) $(ARFLAGS)
libad_a_LIBADD =
am__libad_a_SOURCES_DIST = analysis.cc atom_parameter_manager.cc \
banner.cc bestpdb.cc calculateEnergies.cc call_glss.cc \
call_gs.cc call_ls.cc changeState.cc check_header_float.cc \
check_header_int.cc check_header_line.cc cluster_analysis.cc \
clmode.cc cmdmode.cc cnv_state_to_coords.cc com.cc \
conformation_sampler.cc distdepdiel.cc stateLibrary.cc \
readfield.cc readmap.cc readPDBQT.cc read_parameter_library.cc \
eval.cc gencau.cc getrms.cc get_atom_type.cc \
getInitialState.cc getpdbcrds.cc gs.cc initautodock.cc \
input_state.cc investigate.cc linpack.cc ls.cc mapping.cc \
minmeanmax.cc mkNewState.cc mkTorTree.cc mkRandomState.cc \
nonbonds.cc openfile.cc output_state.cc parse_com_line.cc \
parse_dpf_line.cc parse_param_line.cc parse_PDBQT_line.cc \
parse_trj_line.cc parsetypes.cc print_2x.cc \
print_atomic_energies.cc print_avsfld.cc writePDBQT.cc \
print_rem.cc printdate.cc printEnergies.cc printhms.cc \
prClusterHist.cc prInitialState.cc prTorConList.cc \
qmultiply.cc qtransform.cc quicksort.cc ranlib.cc rep.cc \
scauchy.cc set_cmd_io_std.cc setflags.cc simanneal.cc \
sort_enrg.cc stop.cc strindex.cc success.cc summarizegrids.cc \
support.cc swap.cc timesys.cc timesyshms.cc torNorVec.cc \
torsion.cc trilinterp.cc usage.cc weedbonds.cc \
warn_bad_file.cc coliny.cc eintcal.cc eintcalPrint.cc \
intnbtable.cc nbe.cc PDBQT_tokens.h analysis.h \
atom_parameter_manager.h autocomm.h autoglobal.h banner.h \
bestpdb.h calculateEnergies.h call_glss.h call_gs.h call_ls.h \
changeState.h check_header_float.h check_header_int.h \
check_header_line.h clmode.h cluster_analysis.h cmdmode.h \
cmdtokens.h cnv_state_to_coords.h coliny.h \
conformation_sampler.h constants.h default_parameters.h \
distdepdiel.h dpftoken.h eintcal.h eintcalPrint.h energy.h \
eval.h gencau.h getInitialState.h get_atom_type.h getpdbcrds.h \
getrms.h globals.h grid.h gs.h hybrids.h initautodock.h \
input_state.h intnbtable.h investigate.h ls.h main.h mdist.h \
mkNewState.h mkRandomState.h mkTorTree.h molstruct.h nbe.h \
nonbonds.h openfile.h output_state.h parameters.h \
parse_PDBQT_line.h parse_com_line.h parse_dpf_line.h \
parse_param_line.h parse_trj_line.h parsetypes.h partokens.h \
prClusterHist.h prInitialState.h prTorConList.h \
printEnergies.h print_2x.h print_atomic_energies.h \
print_avsfld.h print_rem.h printdate.h printhms.h qmultiply.h \
qtransform.h quicksort.h ranlib.h readPDBQT.h \
read_parameter_library.h readfield.h readmap.h rep.h \
rep_constants.h set_cmd_io_std.h setflags.h simanneal.h \
sort_enrg.h stateLibrary.h stop.h strindex.h structs.h \
success.h summarizegrids.h support.h swap.h timesys.h \
timesyshms.h torNorVec.h torsion.h trilinterp.h trjtokens.h \
typedefs.h usage.h version.h warn_bad_file.h weedbonds.h \
writePDBQT.h eMapPrepCuda.cc
am__objects_1 = eMapPrepCuda.$(OBJEXT)
am_libad_a_OBJECTS = analysis.$(OBJEXT) \
atom_parameter_manager.$(OBJEXT) banner.$(OBJEXT) \
bestpdb.$(OBJEXT) calculateEnergies.$(OBJEXT) \
call_glss.$(OBJEXT) call_gs.$(OBJEXT) call_ls.$(OBJEXT) \
changeState.$(OBJEXT) check_header_float.$(OBJEXT) \
check_header_int.$(OBJEXT) check_header_line.$(OBJEXT) \
cluster_analysis.$(OBJEXT) clmode.$(OBJEXT) cmdmode.$(OBJEXT) \
cnv_state_to_coords.$(OBJEXT) com.$(OBJEXT) \
conformation_sampler.$(OBJEXT) distdepdiel.$(OBJEXT) \
stateLibrary.$(OBJEXT) readfield.$(OBJEXT) readmap.$(OBJEXT) \
readPDBQT.$(OBJEXT) read_parameter_library.$(OBJEXT) \
eval.$(OBJEXT) gencau.$(OBJEXT) getrms.$(OBJEXT) \
get_atom_type.$(OBJEXT) getInitialState.$(OBJEXT) \
getpdbcrds.$(OBJEXT) gs.$(OBJEXT) initautodock.$(OBJEXT) \
input_state.$(OBJEXT) investigate.$(OBJEXT) linpack.$(OBJEXT) \
ls.$(OBJEXT) mapping.$(OBJEXT) minmeanmax.$(OBJEXT) \
mkNewState.$(OBJEXT) mkTorTree.$(OBJEXT) \
mkRandomState.$(OBJEXT) nonbonds.$(OBJEXT) openfile.$(OBJEXT) \
output_state.$(OBJEXT) parse_com_line.$(OBJEXT) \
parse_dpf_line.$(OBJEXT) parse_param_line.$(OBJEXT) \
parse_PDBQT_line.$(OBJEXT) parse_trj_line.$(OBJEXT) \
parsetypes.$(OBJEXT) print_2x.$(OBJEXT) \
print_atomic_energies.$(OBJEXT) print_avsfld.$(OBJEXT) \
writePDBQT.$(OBJEXT) print_rem.$(OBJEXT) printdate.$(OBJEXT) \
printEnergies.$(OBJEXT) printhms.$(OBJEXT) \
prClusterHist.$(OBJEXT) prInitialState.$(OBJEXT) \
prTorConList.$(OBJEXT) qmultiply.$(OBJEXT) \
qtransform.$(OBJEXT) quicksort.$(OBJEXT) ranlib.$(OBJEXT) \
rep.$(OBJEXT) scauchy.$(OBJEXT) set_cmd_io_std.$(OBJEXT) \
setflags.$(OBJEXT) simanneal.$(OBJEXT) sort_enrg.$(OBJEXT) \
stop.$(OBJEXT) strindex.$(OBJEXT) success.$(OBJEXT) \
summarizegrids.$(OBJEXT) support.$(OBJEXT) swap.$(OBJEXT) \
timesys.$(OBJEXT) timesyshms.$(OBJEXT) torNorVec.$(OBJEXT) \
torsion.$(OBJEXT) trilinterp.$(OBJEXT) usage.$(OBJEXT) \
weedbonds.$(OBJEXT) warn_bad_file.$(OBJEXT) coliny.$(OBJEXT) \
eintcal.$(OBJEXT) eintcalPrint.$(OBJEXT) intnbtable.$(OBJEXT) \
nbe.$(OBJEXT) $(am__objects_1)
libad_a_OBJECTS = $(am_libad_a_OBJECTS)
am__installdirs = "$(DESTDIR)$(bindir)"
binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
PROGRAMS = $(bin_PROGRAMS)
am_autodock4_OBJECTS = main.$(OBJEXT)
autodock4_OBJECTS = $(am_autodock4_OBJECTS)
autodock4_DEPENDENCIES = libad.a $(am__append_2)
autodock4_LINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) \
$(autodock4_LDFLAGS) $(LDFLAGS) -o $@
DEFAULT_INCLUDES = -I.
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
CXXLD = $(CXX)
CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
-o $@
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
CCLD = $(CC)
LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
SOURCES = $(libad_a_SOURCES) $(autodock4_SOURCES)
DIST_SOURCES = $(am__libad_a_SOURCES_DIST) $(autodock4_SOURCES)
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
am__remove_distdir = \
{ test ! -d $(distdir) \
|| { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
&& rm -fr $(distdir); }; }
DIST_ARCHIVES = $(distdir).tar.gz
GZIP_ENV = --best
distuninstallcheck_listfiles = find . -type f -print
distcleancheck_listfiles = find . -type f -print
#murilo
ACLOCAL = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run aclocal-1.10
AMTAR = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run tar
AUTOCONF = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run autoconf
AUTOHEADER = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run autoheader
AUTOMAKE = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run automake-1.10
AWK = gawk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
CPP = gcc -E
#murilo
CPPFLAGS = -I/usr/local/cuda/include -I/common/inc -L/usr/local/cuda/bin -L/usr/local/cuda/lib64 -L../lib -lcuda -lcudart
CUDASDK =
CUDA_CFLAGS = -I/usr/local/cuda/include -I/common/inc
CUDA_LIBS = -L/usr/local/cuda/bin -L/usr/local/cuda/lib64 -L../lib -lcuda -lcudart
CXX = g++
#CXX = nvcc
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -I/usr/local/cuda/include -I/common/inc -L/usr/local/cuda/bin -L/usr/local/cuda/lib64 -L../lib -lcuda -lcudart
CYGPATH_W = echo
DEFS = -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.0.1\" -DPACKAGE_STRING=\"autodock\ 4.0.1\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE=\"autodock\" -DVERSION=\"4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -DCUDA_READY=1 -DHAVE_CUDA_RUNTIME_H=1 -DHAVE_CUDA_H=1
DEPDIR = .deps
ECHO_C =
ECHO_N = -n
ECHO_T =
EGREP = /bin/grep -E
EXEEXT =
GREP = /bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
LDFLAGS =
LIBOBJS =
LIBS =
LTLIBOBJS =
MAKEINFO = ${SHELL} /home/mdocarmo/autodock/autodock/autodock-cuda/missing --run makeinfo #murilo
MKDIR_P = /bin/mkdir -p
NVCC = nvcc
NVCCFLAGS = -D_DEBUG -g -use_fast_math -I. -I/common/inc -DCUDA_READY --compiler-options -fno-strict-aliasing -DUNIX -DADD_ -arch sm_20 -O3
OBJEXT = o
PACKAGE = autodock
PACKAGE_BUGREPORT = autodock@scripps.edu
PACKAGE_NAME = autodock
PACKAGE_STRING = autodock 4.0.1
PACKAGE_TARNAME = autodock
PACKAGE_VERSION = 4.0.1
PATH_SEPARATOR = :
RANLIB = ranlib
SET_MAKE =
SHELL = /bin/sh
STRIP =
VERSION = 4.0.1 #murilo
abs_builddir = /home/mdocarmo/autodock/autodock/autodock-cuda
abs_srcdir = /home/mdocarmo/autodock/autodock/autodock-cuda
abs_top_builddir = /home/mdocarmo/autodock/autodock/autodock-cuda
abs_top_srcdir = /home/mdocarmo/autodock/autodock/autodock-cuda
ac_ct_CC = gcc
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
am__quote =
am__tar = ${AMTAR} chof - "$$tardir"
am__untar = ${AMTAR} xf -
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias =
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias =
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = $(SHELL) /home/mdocarmo/autodock/autodock/autodock-cuda/install-sh #murilo
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
mandir = ${datarootdir}/man
mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /users/majors/tblattne/
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
#coliny.o : coliny.h
# $(CXX) $(CPPFLAGS) $(CXXFLAGS) $(ACRO_INCLUDES) -c coliny.cc -o coliny.o
# see Autoconf manual 4.7.3 (p. 25) support for VPATH
# enabling multi-platform builds
srcdir = .
sysconfdir = ${prefix}/etc
target_alias =
top_builddir = .
top_srcdir = .
EXTRA_DIST = AD4_PARM99.dat AD4_parameters.dat paramdat2h.csh Tests
# Define the AutoDock 4 source code files:
autodock4_SOURCES = \
main.cc
noinst_LIBRARIES = libad.a
libad_a_SOURCES = analysis.cc atom_parameter_manager.cc banner.cc \
bestpdb.cc calculateEnergies.cc call_glss.cc call_gs.cc \
call_ls.cc changeState.cc check_header_float.cc \
check_header_int.cc check_header_line.cc cluster_analysis.cc \
clmode.cc cmdmode.cc cnv_state_to_coords.cc com.cc \
conformation_sampler.cc distdepdiel.cc stateLibrary.cc \
readfield.cc readmap.cc readPDBQT.cc read_parameter_library.cc \
eval.cc gencau.cc getrms.cc get_atom_type.cc \
getInitialState.cc getpdbcrds.cc gs.cc initautodock.cc \
input_state.cc investigate.cc linpack.cc ls.cc mapping.cc \
minmeanmax.cc mkNewState.cc mkTorTree.cc mkRandomState.cc \
nonbonds.cc openfile.cc output_state.cc parse_com_line.cc \
parse_dpf_line.cc parse_param_line.cc parse_PDBQT_line.cc \
parse_trj_line.cc parsetypes.cc print_2x.cc \
print_atomic_energies.cc print_avsfld.cc writePDBQT.cc \
print_rem.cc printdate.cc printEnergies.cc printhms.cc \
prClusterHist.cc prInitialState.cc prTorConList.cc \
qmultiply.cc qtransform.cc quicksort.cc ranlib.cc rep.cc \
scauchy.cc set_cmd_io_std.cc setflags.cc simanneal.cc \
sort_enrg.cc stop.cc strindex.cc success.cc summarizegrids.cc \
support.cc swap.cc timesys.cc timesyshms.cc torNorVec.cc \
torsion.cc trilinterp.cc usage.cc weedbonds.cc \
warn_bad_file.cc coliny.cc eintcal.cc eintcalPrint.cc \
intnbtable.cc nbe.cc PDBQT_tokens.h analysis.h \
atom_parameter_manager.h autocomm.h autoglobal.h banner.h \
bestpdb.h calculateEnergies.h call_glss.h call_gs.h call_ls.h \
changeState.h check_header_float.h check_header_int.h \
check_header_line.h clmode.h cluster_analysis.h cmdmode.h \
cmdtokens.h cnv_state_to_coords.h coliny.h \
conformation_sampler.h constants.h default_parameters.h \
distdepdiel.h dpftoken.h eintcal.h eintcalPrint.h energy.h \
eval.h gencau.h getInitialState.h get_atom_type.h getpdbcrds.h \
getrms.h globals.h grid.h gs.h hybrids.h initautodock.h \
input_state.h intnbtable.h investigate.h ls.h main.h mdist.h \
mkNewState.h mkRandomState.h mkTorTree.h molstruct.h nbe.h \
nonbonds.h openfile.h output_state.h parameters.h \
parse_PDBQT_line.h parse_com_line.h parse_dpf_line.h \
parse_param_line.h parse_trj_line.h parsetypes.h partokens.h \
prClusterHist.h prInitialState.h prTorConList.h \
printEnergies.h print_2x.h print_atomic_energies.h \
print_avsfld.h print_rem.h printdate.h printhms.h qmultiply.h \
qtransform.h quicksort.h ranlib.h readPDBQT.h \
read_parameter_library.h readfield.h readmap.h rep.h \
rep_constants.h set_cmd_io_std.h setflags.h simanneal.h \
sort_enrg.h stateLibrary.h stop.h strindex.h structs.h \
success.h summarizegrids.h support.h swap.h timesys.h \
timesyshms.h torNorVec.h torsion.h trilinterp.h trjtokens.h \
typedefs.h usage.h version.h warn_bad_file.h weedbonds.h \
writePDBQT.h $(am__append_1)
AM_CPPFLAGS = -DNOSQRT \
-DUSE_8A_NBCUTOFF -DDO_NOT_CROSSOVER_IN_QUAT \
-DWRITEPDBQSTATE \
-I$(srcdir)/../acro/include # Standard accuracy, but faster; no crossover in quaternion
autodock4_LDADD = libad.a -lm $(am__append_2)
COLINYLIB = # Not using Coliny
all: all-am
.SUFFIXES:
.SUFFIXES: .cc .cu .o .obj
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@:
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
@for dep in $?; do \
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*$$dep*) \
echo ' cd $(srcdir) && $(AUTOMAKE) --gnu '; \
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exit 1;; \
esac; \
done; \
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
cd $(top_srcdir) && \
$(AUTOMAKE) --gnu Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
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cd $(srcdir) && $(AUTOCONF)
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
clean-noinstLIBRARIES:
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libad.a: $(libad_a_OBJECTS) $(libad_a_DEPENDENCIES)
-rm -f libad.a
$(libad_a_AR) libad.a $(libad_a_OBJECTS) $(libad_a_LIBADD)
$(RANLIB) libad.a
install-binPROGRAMS: $(bin_PROGRAMS)
@$(NORMAL_INSTALL)
test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
@list='$(bin_PROGRAMS)'; for p in $$list; do \
p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
if test -f $$p \
; then \
f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
echo " $(INSTALL_PROGRAM_ENV) $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
$(INSTALL_PROGRAM_ENV) $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
else :; fi; \
done
uninstall-binPROGRAMS:
@$(NORMAL_UNINSTALL)
@list='$(bin_PROGRAMS)'; for p in $$list; do \
f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
rm -f "$(DESTDIR)$(bindir)/$$f"; \
done
clean-binPROGRAMS:
-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
autodock4$(EXEEXT): $(autodock4_OBJECTS) $(autodock4_DEPENDENCIES)
@rm -f autodock4$(EXEEXT)
$(autodock4_LINK) $(autodock4_OBJECTS) $(autodock4_LDADD) $(LIBS)
mostlyclean-compile:
-rm -f *.$(OBJEXT)
distclean-compile:
-rm -f *.tab.c
include ./$(DEPDIR)/analysis.Po
include ./$(DEPDIR)/atom_parameter_manager.Po
include ./$(DEPDIR)/banner.Po
include ./$(DEPDIR)/bestpdb.Po
include ./$(DEPDIR)/calculateEnergies.Po
include ./$(DEPDIR)/call_glss.Po
include ./$(DEPDIR)/call_gs.Po
include ./$(DEPDIR)/call_ls.Po
include ./$(DEPDIR)/changeState.Po
include ./$(DEPDIR)/check_header_float.Po
include ./$(DEPDIR)/check_header_int.Po
include ./$(DEPDIR)/check_header_line.Po
include ./$(DEPDIR)/clmode.Po
include ./$(DEPDIR)/cluster_analysis.Po
include ./$(DEPDIR)/cmdmode.Po
include ./$(DEPDIR)/cnv_state_to_coords.Po
include ./$(DEPDIR)/coliny.Po
include ./$(DEPDIR)/com.Po
include ./$(DEPDIR)/conformation_sampler.Po
include ./$(DEPDIR)/distdepdiel.Po
include ./$(DEPDIR)/eMapPrepCuda.Po
include ./$(DEPDIR)/eintcal.Po
include ./$(DEPDIR)/eintcalPrint.Po
include ./$(DEPDIR)/eval.Po
include ./$(DEPDIR)/gencau.Po
include ./$(DEPDIR)/getInitialState.Po
include ./$(DEPDIR)/get_atom_type.Po
include ./$(DEPDIR)/getpdbcrds.Po
include ./$(DEPDIR)/getrms.Po
include ./$(DEPDIR)/gs.Po
include ./$(DEPDIR)/initautodock.Po
include ./$(DEPDIR)/input_state.Po
include ./$(DEPDIR)/intnbtable.Po
include ./$(DEPDIR)/investigate.Po
include ./$(DEPDIR)/linpack.Po
include ./$(DEPDIR)/ls.Po
include ./$(DEPDIR)/main.Po
include ./$(DEPDIR)/mapping.Po
include ./$(DEPDIR)/minmeanmax.Po
include ./$(DEPDIR)/mkNewState.Po
include ./$(DEPDIR)/mkRandomState.Po
include ./$(DEPDIR)/mkTorTree.Po
include ./$(DEPDIR)/nbe.Po
include ./$(DEPDIR)/nonbonds.Po
include ./$(DEPDIR)/openfile.Po
include ./$(DEPDIR)/output_state.Po
include ./$(DEPDIR)/parse_PDBQT_line.Po
include ./$(DEPDIR)/parse_com_line.Po
include ./$(DEPDIR)/parse_dpf_line.Po
include ./$(DEPDIR)/parse_param_line.Po
include ./$(DEPDIR)/parse_trj_line.Po
include ./$(DEPDIR)/parsetypes.Po
include ./$(DEPDIR)/prClusterHist.Po
include ./$(DEPDIR)/prInitialState.Po
include ./$(DEPDIR)/prTorConList.Po
include ./$(DEPDIR)/printEnergies.Po
include ./$(DEPDIR)/print_2x.Po
include ./$(DEPDIR)/print_atomic_energies.Po
include ./$(DEPDIR)/print_avsfld.Po
include ./$(DEPDIR)/print_rem.Po
include ./$(DEPDIR)/printdate.Po
include ./$(DEPDIR)/printhms.Po
include ./$(DEPDIR)/qmultiply.Po
include ./$(DEPDIR)/qtransform.Po
include ./$(DEPDIR)/quicksort.Po
include ./$(DEPDIR)/ranlib.Po
include ./$(DEPDIR)/readPDBQT.Po
include ./$(DEPDIR)/read_parameter_library.Po
include ./$(DEPDIR)/readfield.Po
include ./$(DEPDIR)/readmap.Po
include ./$(DEPDIR)/rep.Po
include ./$(DEPDIR)/scauchy.Po
include ./$(DEPDIR)/set_cmd_io_std.Po
include ./$(DEPDIR)/setflags.Po
include ./$(DEPDIR)/simanneal.Po
include ./$(DEPDIR)/sort_enrg.Po
include ./$(DEPDIR)/stateLibrary.Po
include ./$(DEPDIR)/stop.Po
include ./$(DEPDIR)/strindex.Po
include ./$(DEPDIR)/success.Po
include ./$(DEPDIR)/summarizegrids.Po
include ./$(DEPDIR)/support.Po
include ./$(DEPDIR)/swap.Po
include ./$(DEPDIR)/timesys.Po
include ./$(DEPDIR)/timesyshms.Po
include ./$(DEPDIR)/torNorVec.Po
include ./$(DEPDIR)/torsion.Po
include ./$(DEPDIR)/trilinterp.Po
include ./$(DEPDIR)/usage.Po
include ./$(DEPDIR)/warn_bad_file.Po
include ./$(DEPDIR)/weedbonds.Po
include ./$(DEPDIR)/writePDBQT.Po
.cc.o:
$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
# source='$<' object='$@' libtool=no \
# DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
# $(CXXCOMPILE) -c -o $@ $<
.cc.obj:
$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
# source='$<' object='$@' libtool=no \
# DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
# $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
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done | \
$(AWK) '{ files[$$0] = 1; nonemtpy = 1; } \
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mkid -fID $$unique
tags: TAGS
TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
tags=; \
here=`pwd`; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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ctags: CTAGS
CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
tags=; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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uninstall-am uninstall-binPROGRAMS
dist-hook:
rm -rf `find $(distdir)/Tests -name CVS -o -name '*.dlg'`
### endif
#
# Makefile targets
#
autodock4.html :
@echo " "
@echo "Creating a colour-coded HTML report of the AutoDock source code"
@echo " "
enscript -E --color -Whtml --toc -p$@ *.h *.cc
check : autodock4 $(srcdir)/Tests/test_autodock4.py
#if HAVE_PYTHON
@echo " "
@echo "Running the Python test_autodock4.py unit-tests on autodock4"
@echo " "
outputdir=`pwd` ;\
cd $(srcdir)/Tests ; chmod u+w . ; python ./test_autodock4.py -d . -e $$outputdir/autodock4 -o $$outputdir
#
# Object dependencies:
#
gs.o : gs.cc gs.h ranlib.h eval.h rep.h support.h writePDBQT.h
$(CXXCOMPILE) -DCHECK_ISNAN -c $(srcdir)/gs.cc
# 2007-04-30 MP & GMM: this line is necessary to be able to compile read_parameter_library.o
read_parameter_library.o : default_parameters.h
default_parameters.h : AD4_parameters.dat paramdat2h.csh
rm -f $@
csh ./paramdat2h.csh > tmp-paramdat
mv -f tmp-paramdat $@
.cu.o:
$(NVCC) -c *.cu $(NVCCFLAGS) $(AM_CPPFLAGS)
# $(NVCC) -o $@ -c $< $(NVCCFLAGS) $(CUDA_LIBS) $(CUDA_CFLAGS)
test :
$(prefix)/bin/autodock4
#
# EOF
#
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: