Name		Name	Last commit message	Last commit date
Latest commit History 118 Commits
TestImages		TestImages
mpiv_toolbox		mpiv_toolbox
saveastiff_2.2		saveastiff_2.2
.gitignore		.gitignore
Aro_parametersTEMPLATE.m		Aro_parametersTEMPLATE.m
ArospotFindingSuite_v2.5_UserGuide_15Dec2014.pdf		ArospotFindingSuite_v2.5_UserGuide_15Dec2014.pdf
LICENSE		LICENSE
README.md		README.md
RFparameters.m		RFparameters.m
UpdateLog.txt		UpdateLog.txt
UpdateLog_v2.5.txt		UpdateLog_v2.5.txt
addStatsToTrainingSet.m		addStatsToTrainingSet.m
addStatsToWormGaussian.m		addStatsToWormGaussian.m
autoGaussianSurf.m		autoGaussianSurf.m
calculateDeltaStats.m		calculateDeltaStats.m
calculateFISHStatistics.m		calculateFISHStatistics.m
calculateRandStats.m		calculateRandStats.m
calibrateCurve.fig		calibrateCurve.fig
calibrateCurve.m		calibrateCurve.m
calibrateProbabilities.m		calibrateProbabilities.m
classifySpots.m		classifySpots.m
classifySpotsOnDirectory.m		classifySpotsOnDirectory.m
colToX.m		colToX.m
collectDigits.m		collectDigits.m
convertWormFitFile1p4To2p0.m		convertWormFitFile1p4To2p0.m
convertWormFitFilesWrapper.m		convertWormFitFilesWrapper.m
correctBleachAndFilter.m		correctBleachAndFilter.m
createSegImages.m		createSegImages.m
createSegmenttrans.m		createSegmenttrans.m
createSpotTrainingSet.m		createSpotTrainingSet.m
doEvalFISHStacksForAll.m		doEvalFISHStacksForAll.m
evalFISHStacks.m		evalFISHStacks.m
gfit2.m		gfit2.m
histseries_forSpotTreeProbs.m		histseries_forSpotTreeProbs.m
identifySpots.fig		identifySpots.fig
identifySpots.m		identifySpots.m
imdownsample.m		imdownsample.m
imscale.m		imscale.m
imupsample.m		imupsample.m
laplaceFISH.m		laplaceFISH.m
makeSpotCountInterval.m		makeSpotCountInterval.m
medianfilter.m		medianfilter.m
modaldlg.fig		modaldlg.fig
modaldlg.m		modaldlg.m
morphFilterSpotImage3D.m		morphFilterSpotImage3D.m
mygaussfit.m		mygaussfit.m
newFISHfilter.m		newFISHfilter.m
parametersForSigmoidProbabilityCalibrationCurve.mat		parametersForSigmoidProbabilityCalibrationCurve.mat
parseStackNames.m		parseStackNames.m
readmm.m		readmm.m
reviewFISHClassification.fig		reviewFISHClassification.fig
reviewFISHClassification.m		reviewFISHClassification.m
rowToY.m		rowToY.m
sc.m		sc.m
scale.m		scale.m
spotStatsDataAligning.m		spotStatsDataAligning.m
spotStatsDataAligning2.m		spotStatsDataAligning2.m
trainRFClassifier.m		trainRFClassifier.m
translateToNewCoordinates.m		translateToNewCoordinates.m
updateSpotStats.m		updateSpotStats.m
updateTrainingSet.m		updateTrainingSet.m
visualizeTrainingSet.m		visualizeTrainingSet.m
visualizeWGF.m		visualizeWGF.m
xToCol.m		xToCol.m
yToRow.m		yToRow.m

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AroSpotFindingSuite

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AroSpotFindingSuite

labs.biology.ucsd.edu/rifkin/Aro.html

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