Name		Name	Last commit message	Last commit date
Latest commit History 797 Commits
adapterremoval		adapterremoval
admixture/v1.3.0		admixture/v1.3.0
alfred		alfred
alien_trimmer		alien_trimmer
artic-ncov2019		artic-ncov2019
bam-readcount/v1.0.1		bam-readcount/v1.0.1
bayestraits		bayestraits
bbmap/v39.01		bbmap/v39.01
bcftools		bcftools
bedtools		bedtools
bmge/v1.12		bmge/v1.12
bowtie		bowtie
bowtie2		bowtie2
bwa/v0.7.17		bwa/v0.7.17
canu/v2.0		canu/v2.0
catch/v1.5.1		catch/v1.5.1
cd-git/v4.8.1		cd-git/v4.8.1
checkm		checkm
civet/v2.1.2		civet/v2.1.2
clustal_omega		clustal_omega
damageprofiler/v1.1		damageprofiler/v1.1
deseq/v1.39.0		deseq/v1.39.0
dsrc/v2.0.2		dsrc/v2.0.2
epa-ng/v0.3.8		epa-ng/v0.3.8
fastani		fastani
fastcodeml		fastcodeml
fastme		fastme
fastqc		fastqc
fastqutils		fastqutils
fasttree		fasttree
fastxtoolkit/v0.0.14		fastxtoolkit/v0.0.14
finestructure/v4.1.1		finestructure/v4.1.1
gblocks/v0.91b		gblocks/v0.91b
goalign		goalign
gofasta		gofasta
gotree		gotree
guppy/v3.1.5		guppy/v3.1.5
haploconduct/v0.2.1		haploconduct/v0.2.1
haplogrep/v2.4.0		haplogrep/v2.4.0
hisat2/v2.0.5		hisat2/v2.0.5
hmmer/v3.3		hmmer/v3.3
igv		igv
indelible/v1.03		indelible/v1.03
inkscape		inkscape
iqtree		iqtree
irma		irma
ivar		ivar
jphmm/v03.2015		jphmm/v03.2015
jphmm_tools		jphmm_tools
jq/v1.6		jq/v1.6
khmer		khmer
kraken		kraken
krakenuniq		krakenuniq
label/v0.6.4		label/v0.6.4
lastal/v980		lastal/v980
lsd/v0.3beta-55183ca9d0		lsd/v0.3beta-55183ca9d0
lsd2		lsd2
mafft		mafft
mapdamage/v2.2.1		mapdamage/v2.2.1
mash		mash
minimap2		minimap2
minionqc/v1.4.1		minionqc/v1.4.1
mrbayes		mrbayes
multiqc		multiqc
muscle		muscle
musket/v1.1		musket/v1.1
nanoplot/v1.29.1		nanoplot/v1.29.1
nanosim/v3.1.0		nanosim/v3.1.0
newick_utilities/v1.6		newick_utilities/v1.6
nextstrain-base/build-20230208T000021Z		nextstrain-base/build-20230208T000021Z
noisy/v1.5.12		noisy/v1.5.12
paml/v4.8a		paml/v4.8a
pangolin		pangolin
papara/v2.5		papara/v2.5
pastml		pastml
pathphynder		pathphynder
pcoc/v898c138		pcoc/v898c138
perl		perl
phylodeep		phylodeep
phyml-sms		phyml-sms
phyml		phyml
picard		picard
polecat/b4a36f3		polecat/b4a36f3
predicthaplo/v1.0		predicthaplo/v1.0
ptp/v4bb2daf		ptp/v4bb2daf
python-evol		python-evol
python-ml		python-ml
python		python
r-base		r-base
r-evol		r-evol
r-extended		r-extended
r-gisaid/v4.1.2		r-gisaid/v4.1.2
r-sra		r-sra
rappas/v1.21		rappas/v1.21
raxml-ng		raxml-ng
raxml		raxml
reseq/053b8d1		reseq/053b8d1
rna-seqc		rna-seqc
s3utils/v0.6.1		s3utils/v0.6.1
samtools		samtools

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