v0.4.5

• Corrected tindex computation (4fb145b)
• gotree matrix can take the option --metric to choose between branch length, bootstrap supports, or none 26ea287
• Added several metrics to compare trees (thanks @lucblassel ) 16bb1ae
• Added command gotree brlen set to set the length of all branches, and options --internal and --external a61803b
• Added command gotree compute mutations to extract the list of mutations along the branches of a phylogenetic tree, given the sequences of all internal and external nodes 76f7e3
• Updated newick parser to allow ';' in node/branch comments c7e2aa1
• Added command gotree collapse name to collapse branches that have a given name/id 0b9f8fa
• Added command gotree ltt to compute lineage through time data / plot (doc)

v0.4.4

• Added support for Nextstrain json tree input with option --format nextstrain
• Update go to version 1.19

v0.4.4a

• Added option --annotation-fileto gotree draw command, to color tips (thanks @lucblassel #19 !)
• Updated tbe support to take into account equally distant branches in the output logs
• Added branch depth in tbe log
• Added command gotree comment transfer to transfer node names to comments
• Added parent/child node names in gotree stats nodesoutput
• Added comments compared edge comment to gotree compare edges
• Updated go to 1.18.3

v0.4.3

• gotree stats tips now gives the length of the terminal branch + the root to tip length
• Added gotree resolve name command, that adds a new tip (with a 0-length branch) at each named internal node
• gotree stats edges now gives (for rooted trees) the number of branches from the root (output columns have changed)
• Minor corrections (comments, doc, etc.)
  From v0.4.3a:
• Added gotree graft command (doc)
• Added gotree collapse cladecommand (doc)
• Updated gotree prune command to take into account internal nodes with a single child

v0.4.3a

• Added gotree graft command (doc)
• Added gotree collapse cladecommand (doc)
• Updated gotree prune command to take into account internal nodes with a single child

v0.4.2

• Corrected -i option for command labels
• Switched from dep to go modules
• Github actions
• Added --translateoption to reformat nexus (replaces tip names by indices, and prints a translation table in the output nexus format)
• Switched to go 1.16.4
• Solved some drawing problems (#15, partly)
• Updated citation

v0.4.1

• Correction for rooted trees
• Changed goalign to v0.3.3c #8
• Added options --rm-quotes and --add-quotes to gotree rename #9
• Modified Parsimony / number of steps
• Addded --rf option to compare trees #10
• Added options --root and --tips to collapse brlength, support, and and depth commands #12
• Added labels command #13

v0.4.1c: Added options --root and --tips to collapse brlength, support, and de…

• Added options --root and --tips to collapse brlength, support, and depth commands

v0.4.1b

• Corrected parsimony computation + output number of steps
• Addded --rf option to compare trees #10

v0.4.1a

• Corrected support of rooted trees
• Added options --rm-quotes and --add-quotes to gotree rename #9
• Changed goalign dep to version v0.3.3c #8