Add Arabidopsis thaliana to inlined organisms

The organisms object should be expanded, split into a different file, and populated at chromosome build time
eweitz · Apr 3, 2019 · 49aafc1 · 49aafc1
1 parent e2591d2
commit 49aafc1
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/src/js/init/configure.js b/src/js/init/configure.js
@@ -109,6 +109,14 @@ function configureOrganisms(ideo) {
         default: 'GCF_000001635.20'
       }
     },
+    3702: {
+      commonName: 'Arabidopsis thaliana',
+      scientificName: 'Arabidopsis thaliana',
+      scientificNameAbbr: 'A. thaliana',
+      assemblies: {
+        default: 'TAIR10'
+      }
+    },
     4641: {
       commonName: 'banana',
       scientificName: 'Musa acuminata',

diff --git a/src/js/init/init.js b/src/js/init/init.js
@@ -147,7 +147,7 @@ function getBandFileNames(taxid, bandFileNames, ideo) {
 
   bandFileName = getBandFileName(taxid, accession, ideo);
 
-  if (taxid === '9606' || taxid === '10090') {
+  if (taxid in ideo.organisms) {
     bandFileNames[taxid] = bandFileName;
   }
   return bandFileNames;