Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Tabulate filtered genome annotations #184

Merged
merged 18 commits into from Dec 22, 2019
Merged

Tabulate filtered genome annotations #184

merged 18 commits into from Dec 22, 2019

Conversation

eweitz
Copy link
Owner

@eweitz eweitz commented Dec 22, 2019

This enables getting Ideogram annotations after filtering, via ideogram.filteredAnnots.

You can then present faceted genome search results in a table. Once there, users can sort and search the dynamically refined features -- e.g. gene lists, variant lists.

The new "Differential expression of genes" example shows this new filtering, tabulating, searching, and sorting in action for NASA GeneLab data on how outer space affects gene expression in muscle.

ideogram_filtered_annotations_table_2019-12-22

@coveralls
Copy link

coveralls commented Dec 22, 2019

Coverage Status

Coverage decreased (-0.3%) to 90.55% when pulling 3b541c4 on filtered-annots-table into 3dfabe3 on master.

@eweitz eweitz merged commit 99d0ec8 into master Dec 22, 2019
@eweitz eweitz deleted the filtered-annots-table branch December 23, 2019 11:58
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants