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bowtie1 log has been changed #1615

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nservant opened this issue Jan 20, 2022 · 1 comment
Closed

bowtie1 log has been changed #1615

nservant opened this issue Jan 20, 2022 · 1 comment
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bug: module Bug in a MultiQC module

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@nservant
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nservant commented Jan 20, 2022

Description of bug

Hi,
It seems that the bowtie1 log has been changed in the latest version (>1.3.0)

# reads processed: 16515809
# reads with at least one alignment: 1070136 (6.48%)
# reads that failed to align: 15445673 (93.52%)
# reads with alignments suppressed due to -m: 1531 (0.01%)

The number of aligned reads is defined in the module as

"reads_aligned": r"# reads with at least one reported alignment:\s+(\d+)",
"reads_aligned_percentage": r"# reads with at least one reported alignment:\s+\d+\s+\(([\d\.]+)%\)",

and so is no longer recognized by MultiQC.
Thanks

File that triggers the error

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MultiQC Error log

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@ewels ewels added the bug: module Bug in a MultiQC module label Jan 21, 2022
@ewels ewels closed this as completed in 18c9faa Jan 25, 2022
@ewels
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ewels commented Jan 25, 2022

Thanks for letting me know @nservant - should be fixed in 18c9faa

ewels added a commit to MultiQC/test-data that referenced this issue Jan 26, 2022
vladsavelyev pushed a commit to vladsavelyev/MultiQC_TestData that referenced this issue Apr 16, 2022
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Labels
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