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bismark_summary_report.txt
42 lines (42 loc) · 6.3 KB
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bismark_summary_report.txt
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File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs
P1000_103_1_val_1.fq.gz_bismark_bt2_pe.bam 7360563 6299687 948794 112081 1 2384869 3914818 137476561 4869533 2081204 612003 30113795 1899476 97900550
P1000_104_1_val_1.fq.gz_bismark_bt2_pe.bam 6676601 5691296 872389 112916 0 1502454 4188842 147667038 5290054 2240939 654783 32558385 2013879 104908998
P1000_105_1_val_1.fq.gz_bismark_bt2_pe.bam 7246812 6258033 884793 103986 0 2147431 4110602 145682135 5366855 1978620 640414 32235437 1969159 103491650
P1000_106_1_val_1.fq.gz_bismark_bt2_pe.bam 6739270 5777837 852803 108630 0 1922112 3855725 131930034 4696903 2013813 573379 29002381 1779172 93864386
P1000_107_1_val_1.fq.gz_bismark_bt2_pe.bam 7705029 6606264 970257 128508 0 2067793 4538471 159015116 5803435 2494434 700773 35611270 2104844 112300360
P1000_108_1_val_1.fq.gz_bismark_bt2_pe.bam 8717242 7490521 1095822 130899 0 2800155 4690366 166941505 6107180 2576737 721852 37049083 2189595 118297058
P1000_110_1_val_1.fq.gz_bismark_bt2_pe.bam 6961273 5984221 871476 105576 0 1561478 4422743 154096025 5628631 2235253 684087 34044778 2099141 109404135
P1000_112_1_val_1.fq.gz_bismark_bt2_pe.bam 5659743 4891518 686439 81786 0 1021310 3870208 135277279 4927604 1896523 601307 29914079 1849151 96088615
P1000_113_1_val_1.fq.gz_bismark_bt2_pe.bam 5832764 5018452 713698 100614 0 1270837 3747615 125473310 4541496 1846000 541359 27846696 1662983 89034776
P1000_114_1_val_1.fq.gz_bismark_bt2_pe.bam 8304441 7124781 1027234 152426 0 3354318 3770463 124365541 4674195 1995536 541688 27635244 1634981 87883897
P1000_117_1_val_1.fq.gz_bismark_bt2_pe.bam 8383973 7136868 1104668 142437 0 2880144 4256724 150345172 5503843 2408910 639677 33446574 1945018 106401150
P1000_120_1_val_1.fq.gz_bismark_bt2_pe.bam 7933782 6850077 967665 116040 0 2423561 4426516 152425922 5469410 2199366 634020 33939561 1940955 108242610
P1000_121_1_val_1.fq.gz_bismark_bt2_pe.bam 8329115 7033053 1169247 126815 0 2318096 4714957 164147537 6049070 2707188 681471 36644229 2059365 116006214
P1000_201_1_val_1.fq.gz_bismark_bt2_pe.bam 8477822 7256037 1098710 123071 4 2658882 4597155 160799023 5507826 2796658 686967 35753100 2109956 113944516
P1000_202_1_val_1.fq.gz_bismark_bt2_pe.bam 6503372 5574371 834330 94668 3 1797362 3777009 134897264 4835765 2310740 579560 30162257 1770470 95238472
P1000_203_1_val_1.fq.gz_bismark_bt2_pe.bam 9811105 8469937 1193492 147676 0 4088442 4381495 157374289 5569088 2685617 715125 34908022 2210579 111285858
P1000_204_1_val_1.fq.gz_bismark_bt2_pe.bam 6656552 5699448 846137 110967 0 1562257 4137191 142503635 4763758 2415356 648659 31424116 2059460 101192286
P1000_209_1_val_1.fq.gz_bismark_bt2_pe.bam 6045669 5183518 773523 88627 1 1425015 3758503 132255987 4553885 2236028 570319 29154332 1789457 93951966
P1000_212_1_val_1.fq.gz_bismark_bt2_pe.bam 8960852 7697507 1127599 135746 0 3432464 4265043 152440607 5382763 2546597 653934 33771512 2013263 108072538
P1000_215_1_val_1.fq.gz_bismark_bt2_pe.bam 8916196 7786939 995216 134040 1 4028665 3758274 128916045 4527476 2048421 568562 28712359 1748234 91310993
P1000_217_1_val_1.fq.gz_bismark_bt2_pe.bam 9718385 8300655 1247942 169788 0 3638537 4662118 169463218 5917618 3061424 726162 37638189 2211439 119908386
P1000_219_1_val_1.fq.gz_bismark_bt2_pe.bam 8116329 7008943 967255 140131 0 2784252 4224691 145819430 5034166 2640533 622643 32643102 1879864 102999122
P1000_222_1_val_1.fq.gz_bismark_bt2_pe.bam 9355860 7977998 1210691 167168 3 3264400 4713598 169892283 5873958 3089755 738484 37665357 2255589 120269140
P1000_223_1_val_1.fq.gz_bismark_bt2_pe.bam 8120980 6886735 1101486 132759 0 2991741 3894994 137761923 4812100 2655686 644788 30568622 1970571 97110156
P1000_301_1_val_1.fq.gz_bismark_bt2_pe.bam 8890282 7829399 930412 130470 1 4379509 3449890 111893711 4107304 1601557 503785 25022757 1520843 79137465
P1000_302_1_val_1.fq.gz_bismark_bt2_pe.bam 9389310 8123410 1116688 149210 2 4990223 3133187 106781940 4063157 1752993 467774 23842001 1403595 75252420
P1000_305_1_val_1.fq.gz_bismark_bt2_pe.bam 9382201 8308576 930786 142839 0 5665362 2643214 87423408 3302841 1167502 378462 19547326 1136507 61890770
P1000_306_1_val_1.fq.gz_bismark_bt2_pe.bam 9423228 8262474 1005915 154839 0 4135943 4126531 136995945 5004746 1697956 591106 30497171 1797832 97407134
P1000_307_1_val_1.fq.gz_bismark_bt2_pe.bam 8575345 7375129 1068448 131766 2 2852387 4522742 153902464 5698450 2285112 662708 34338832 2009555 108907807
P1000_308_1_val_1.fq.gz_bismark_bt2_pe.bam 8900927 7719156 1044542 137229 0 3045535 4673621 171685839 6124063 2066834 739803 37653614 2314809 122786716
P1000_309_1_val_1.fq.gz_bismark_bt2_pe.bam 8306777 7225272 946321 135179 5 3915113 3310159 116108859 4110401 1592496 515983 25472054 1600595 82817330
P1000_310_1_val_1.fq.gz_bismark_bt2_pe.bam 8350129 7208467 1015377 126284 1 2473298 4735169 157325588 5701413 2281929 690498 34812008 2127352 111712388
P1000_403_1_val_1.fq.gz_bismark_bt2_pe.bam 8691914 7521807 1046004 124102 1 2817166 4704641 161037093 5536238 2551880 733785 35711688 2293762 114209740
P1000_404_1_val_1.fq.gz_bismark_bt2_pe.bam 9133733 7949016 1054743 129974 0 2908865 5040151 176385813 6187394 2756364 779418 39264126 2403619 124994892
P1000_405_1_val_1.fq.gz_bismark_bt2_pe.bam 10461640 9132175 1179203 150262 0 3949446 5182729 176675539 6135417 2768510 789873 39359627 2447315 125174797
P1000_406_1_val_1.fq.gz_bismark_bt2_pe.bam 7832825 6751041 949589 132191 4 1876896 4874145 166725084 5643193 2656116 739715 36943971 2302828 118439261
P1000_407_1_val_1.fq.gz_bismark_bt2_pe.bam 9876385 8522923 1192043 161418 1 2279853 6243070 214698319 7327347 3437327 1008747 47456532 3174627 152293739
P1000_411_1_val_1.fq.gz_bismark_bt2_pe.bam 9186064 7800464 1250609 134990 1 2796319 5004145 176727921 6191526 3065767 797000 39462622 2449199 124761807
P1000_501_1_val_1.fq.gz_bismark_bt2_pe.bam 9067477 7841590 1082200 143687 0 2327653 5513937 188042963 6929243 2359094 834172 41789966 2551919 133578569
P1000_603_1_val_1.fq.gz_bismark_bt2_pe.bam 10613635 9069487 1388670 155478 0 2598629 6470858 224503061 7828515 3632386 983097 49966484 3031199 159061380
P1000_604_1_val_1.fq.gz_bismark_bt2_pe.bam 8037911 6633570 1290015 114322 4 3115274 3518296 121932873 4209410 1869392 518629 26938594 1613247 86783601