Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Other easy ways for people to get data from SRA #5

Open
DCGenomics opened this issue Mar 2, 2019 · 1 comment
Open

Other easy ways for people to get data from SRA #5

DCGenomics opened this issue Mar 2, 2019 · 1 comment
Labels
enhancement

Comments

@DCGenomics
Copy link

Say you were looking for a specific gene or transcript, or wanted to map a transcriptome project to a genome, you could stream the data directly using hisat2 or magicBLAST. Seems that would be a nice option for users.

Cheers!

Ben
@ewels
Copy link
Owner

ewels commented Mar 3, 2019

Hi Ben!

Thanks for the suggestion. Is there some specific command that you think would be useful? I'm a little hesitant to go beyond commands that fetch the data as I think it could snowball to be a lot of options :) Hopefully the raw list of URLs is still pretty easy to manipulate for streaming applications..

Phil

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@ewels @DCGenomics