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Convert FilteredFileReader to use FileSpec #134

Convert FilteredFileReader to use FileSpec

Convert FilteredFileReader to use FileSpec #134

name: Build and Test
on:
push:
branches: [main]
pull_request:
branches: [main]
jobs:
build:
name: Build Aria Data Tools on ${{ matrix.os }} / ${{ matrix.cmakeOptions }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macOS-latest]
cmakeOptions: [BUILD_WITH_PANGOLIN=ON, BUILD_WITH_PANGOLIN=OFF]
steps:
- name : Checkout
uses: actions/checkout@v2
with:
submodules: 'true'
- name: Install dependencies
shell: bash
run: |
if [ "$RUNNER_OS" == "Linux" ]; then
# Update & upgrade package lists
sudo apt-get update -y
sudo apt-get upgrade
# Deal with Github CI limitation
# https://github.com/actions/runner-images/issues/6399#issuecomment-1285011525
sudo apt install -y libunwind-dev
# Generic dependencies
sudo apt-get install cmake
# Install VRS dependencies
sudo apt-get install -o Acquire::Retries=5 \
libgtest-dev libgmock-dev \
libfmt-dev libcereal-dev \
libturbojpeg-dev libpng-dev \
liblz4-dev libzstd-dev libxxhash-dev \
libboost-system-dev libboost-filesystem-dev libboost-thread-dev libboost-chrono-dev libboost-date-time-dev
# Build Cereal (header only library)
cd /tmp; git clone https://github.com/USCiLab/cereal.git -b v1.3.2 \
&& cd cereal \
&& cmake -DSKIP_PORTABILITY_TEST=1 -DJUST_INSTALL_CEREAL=ON .; sudo make -j$thread install; rm -rf /tmp/cereal;
# Clean APT cache
sudo apt-get clean
elif [ "$RUNNER_OS" == "macOS" ]; then
# Install system deps with Homebrew
brew install cmake
# VRS dependencies
brew install boost fmt sophus cereal googletest glog lz4 zstd xxhash libpng jpeg-turbo
else
echo "$RUNNER_OS not supported"
exit 1
fi
- name: Install & build optional dependencies (Pangolin)
shell: bash
if: startsWith(matrix.cmakeOptions, 'BUILD_WITH_PANGOLIN=ON')
run: |
if [ "$RUNNER_OS" == "Linux" ]; then
sudo apt-get install \
libeigen3-dev \
libglew-dev libgl1-mesa-dev \
libwayland-dev libxkbcommon-dev wayland-protocols
elif [ "$RUNNER_OS" == "macOS" ]; then
brew install eigen glew
fi
# Build and install Pangolin (optional)
cd /tmp; git clone https://github.com/stevenlovegrove/Pangolin.git -b v0.8 \
&& mkdir Pangolin_Build && cd Pangolin_Build \
&& cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_TOOLS=OFF -DBUILD_PANGOLIN_PYTHON=OFF -DBUILD_EXAMPLES=OFF ../Pangolin/ \
&& sudo make -j$thread install;
- name: Configure
shell: bash
run: |
mkdir build
cmake -DCMAKE_BUILD_TYPE=RELEASE -S ./src -B build -D${{ matrix.cmakeOptions }}
- name: Build and Test
shell: bash
run: |
cd build
make -j8
ctest -j
- name: Build Python bindings
shell: bash
run: |
cd ./src
# Installing Python and dependencies
if [ "$RUNNER_OS" == "Linux" ]; then
sudo apt-get install libpython3-dev python3-pip
sudo pip3 install pybind11[global] numpy
elif [ "$RUNNER_OS" == "macOS" ]; then
pip3 install pybind11[global] numpy
else
echo "$RUNNER_OS not supported"
exit 1
fi
# Build and install Python bindings
pip3 install --global-option=build_ext --global-option="-j8" .