download model from huggingface

[saeid976]

Hi dear support team

I want to use your awesome transformer, but our HPC cluster does not have internet access due to firewall restriction.
I download model and config, ... files from huggingface (https://huggingface.co/facebook/esm2_t33_650M_UR50D/tree/main), i try to load model with:
path = Path(file).resolve().parent.joinpath('esm')
model, alphabet = esm.pretrained(path)
This trick dont work! and this error occur:
TypeError: 'module' object is not callable

How i can to load model?

Thanks

[tomsercu]

The model and config from huggingface should be used with the huggingface transformers library.
You can look at this PR for a script to download all model weights and then a flag --model-dir for the script scripts/esmfold_inference.py https://github.com/facebookresearch/esm/pull/371/files

[saeid976]

thanks dear Tom

i have another question! i try to install open-fold to using ESMFold but this error occur:

pip install -q git+https://github.com/aqlaboratory/openfold.git@"6908936b68ae89f67755240e2f588c09ec31d4c8"
error: subprocess-exited-with-error

× git clone --quiet https://github.com/aqlaboratory/openfold.git /tmp/pip-req-build-19duubeb did not run successfully.
│ exit code: 128
╰─> [2 lines of output]
error: The requested URL returned error: 403 Forbidden while accessing https://github.com/aqlaboratory/openfold.git/info/refs
fatal: HTTP request failed
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× git clone --quiet https://github.com/aqlaboratory/openfold.git /tmp/pip-req-build-19duubeb did not run successfully.
│ exit code: 128
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

how i can install it?

[tomsercu]

something seems wrong with the double quotes here, the command you issue is different than what we list in the readme.
If this persists please open a new issue. Thanks!