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What's the precision of esmfold

lzygitk7 asked Jul 24, 2024 in Q&A · Unanswered

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Reduce protein embedding dimensions

lincoln-harris asked Sep 12, 2023 in Q&A · Unanswered

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Inverse Folding Feature Request: Fixing parts of the protein sequence

Xiaoxiao0606 asked Jun 28, 2024 in Q&A · Unanswered

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Help with Esm-2 model

Afganitia asked Jun 9, 2024 in Q&A · Answered

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A question about esm-1v

lzygitk7 asked Jun 8, 2024 in Q&A · Unanswered

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Using ESM2-650M to obtain protein embedding, why does it take longer when the batch_size is larger?

ylzdmm asked May 27, 2024 in Q&A · Answered

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Python 3.11 support

Lservi asked May 8, 2024 in General · Unanswered

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Availability of UR50/S, UR50/D also UR100/S and UR100/D

j-fife asked Mar 6, 2024 in Q&A · Unanswered

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Validity of comparing fp16 generated ESM2 embeddings with the ESM Atlas embeddings?

allcatsaregrey started May 22, 2024 in ESM Metagenomic Atlas

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Prediction protein structure using ESMFOLD2 - 'ESM2' object has no attribute 'infer'

heliogabale asked Jul 11, 2023 in Q&A · Unanswered

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Which model did you use to predict Mgnify90 sequences?

zkskek321 started Nov 28, 2022 in ESM Metagenomic Atlas

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Row and column states swapped when loading pretrained MSA Transformer

bbrier asked May 27, 2024 in General · Unanswered

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How to reduce memory usage of ESM2-650

ylzdmm asked May 7, 2024 in Q&A · Answered

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Extract contacts from fine tuned model

nilshof01 asked Apr 10, 2024 in Q&A · Unanswered

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a decoder for ESM-2 token representations

tomerco4 asked May 16, 2023 in Q&A · Unanswered

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How to do the logistic regression on my own dataset

Yang-J-LIN asked May 14, 2021 in Q&A · Answered

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separation token

casperg92 asked Oct 25, 2021 in Q&A · Unanswered

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Subsampling with ESM

velocirraptor23 asked Apr 15, 2024 in Ideas · Unanswered

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Contact prediction for multimeric proteins

AnjaliSetiya asked Apr 8, 2024 in Q&A · Unanswered

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Is "contact_prediction" unsupervised?

ddofer asked Jun 20, 2021 in Q&A · Answered

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RuntimeError: CUDA out of memory. Tried to allocate 3.05 GiB (GPU 0; 23.65 GiB total capacity; 17.04 GiB already allocated; 2.81 GiB free; 19.77 GiB reserved in total by PyTorch) If reserved memory is >> allocated memory try setting max_split_size_mb to avoid fragmentation. See documentation for Memory Management and PYTORCH_CUDA_ALLOC_CONF

Tom0515Lt asked Apr 5, 2024 in Q&A · Unanswered

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Using finetuned ESM2 model with lm-design

martinez-zacharya asked Apr 1, 2024 in General · Unanswered

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Issue with certificates from https://esmatlas.com

valasatava started Feb 29, 2024 in ESM Metagenomic Atlas

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Fine-tuning an ESM pre-trained model

tomsercu asked Feb 9, 2021 in Q&A · Unanswered

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Details about the methodology of visualization used in ESM Metagenomic Atlas

OreFoX18 asked Mar 4, 2024 in Q&A · Unanswered

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