Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Workaround for h5py memory leak #227

Closed
wants to merge 3 commits into from
Closed

Workaround for h5py memory leak #227

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
437c3ba
Merge pull request #1 from facebookresearch/master
soumickmj Oct 8, 2020
cd8f9a2
Merge branch 'facebookresearch:main' into master
soumickmj Mar 9, 2022
2056879
workaround for h5py memory leak
soumickmj Mar 9, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions fastmri/data/mri_data.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -345,11 +345,11 @@ def __getitem__(self, i: int):
fname, dataslice, metadata = self.examples[i]

with h5py.File(fname, "r") as hf:
kspace = hf["kspace"][dataslice]
kspace = hf["kspace"][dataslice].copy()
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Throws an error.


mask = np.asarray(hf["mask"]) if "mask" in hf else None
mask = np.asarray(hf["mask"].copy()) if "mask" in hf else None
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Throws an error.


target = hf[self.recons_key][dataslice] if self.recons_key in hf else None
target = hf[self.recons_key][dataslice].copy() if self.recons_key in hf else None
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Throws an error.


attrs = dict(hf.attrs)
attrs.update(metadata)
Expand Down