5. GUI version (Linux)
To make things easy to visualise and use, you can opt to download the GUI version.
First, click here to download the GUI version. Then, give the file executable permissions.
chmod +x finemav_GUI
Then launch the GUI.
./finemav_GUI
Refer to the Running FineMAV page to find the checklist of the fields that need to be included in the input files.
The test files can be found in this repository in the "test_files" directory. To clone this repository, do this:
git clone https://github.com/fadilla-wahyudi/finemav/
Then navigate to the "test_files" directory.
cd finemav
cd test_files
| Input file | Prefix | Reference genome | VEP file (supplementary file) |
|---|---|---|---|
VCF_AllFields.txt |
testrun | hg19 | None |
| Input file | Prefix | Reference genome | VEP file (supplementary file) |
|---|---|---|---|
VCF_no_AA.txt |
testrun | hg19 | VEP_AA.txt |
| Input file | Prefix | Reference genome | VEP file (supplementary file) |
|---|---|---|---|
VCF_no_CADDPHRED.txt |
testrun | hg19 | VEP_CADDPHRED.txt |
| Input file | Prefix | Reference genome | VEP file (supplementary file) |
|---|---|---|---|
VCF_no_AA_CADDPHRED.txt |
testrun | hg19 | VEP_AA_CADDPHRED.txt |
