Skip to content

Commit

Permalink
polish windows installer
Browse files Browse the repository at this point in the history
  • Loading branch information
fangq committed Jul 4, 2020
1 parent 0e2165f commit 4bda593
Show file tree
Hide file tree
Showing 7 changed files with 262 additions and 191 deletions.
89 changes: 89 additions & 0 deletions NOTICE.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,89 @@
=============================================================
Monte Carlo eXtreme (MCX) Suite
version 2020
=============================================================

Copyright (c) 2010-2020 Qianqian Fang <q.fang at neu.edu>

- Computational Optics & Translational Imaging (COTI) Lab (http://fanglab.org)
- Department of Bioengineering, Northeastern University
- 360 Huntington Ave, ISEC 204, Boston, MA 02115, USA
- Website: http://mcx.space
- Github: http://github.com/mcextreme/

=============================================================
:: Acknowledgement:

The MCX Project is funded by the US National Institutes of Health (NIH)/National Institute of General Medical Sciences (NIGMS) under grant R01-GM114365 (PI: Qianqian Fang)

=============================================================
:: License:

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License, as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

The full text of the software license can be found at
https://www.gnu.org/licenses/gpl-3.0.en.html

To continue installation, you must agree with the above license.

=============================================================
:: Citation:

The technical details of the software tools included in this
package can be found in the below publications.

If you use MCX/MMC/MCX-CL in your research, you agree to
cite the relevant papers in your publications.

-- "MCX" --
# [Fang2009] Qianqian Fang and David Boas, "Monte Carlo Simulation of Photon Migration in 3D Turbid Media Accelerated by Graphics Processing Units," Opt. Express, vol. 17, issue 22, pp. 20178-20190 (2009).
$Summary: original MCX paper
$Download: http://www.osapublishing.org/oe/abstract.cfm?uri=oe-17-22-20178

-- "MCX-CL" --
# [Yu2018] Leiming Yu, Fanny Nina-Paravecino, David Kaeli, Qianqian Fang, "Scalable and massively parallel Monte Carlo photon transport simulations for heterogeneous computing platforms," J. Biomed. Opt. 23(1), 010504 (2018).
$Summary: original MCX-CL (OpenCL) paper
$Download: https://doi.org/10.1117/1.JBO.23.1.010504

-- "MMC" --
# [Fang2019] Qianqian Fang*, Shijie Yan, "Graphics processing unit-accelerated mesh-based Monte Carlo photon transport simulations," J. of Biomedical Optics, 24(11), 115002 (2019)
$Summary: GPU-based MMC
$Download: http://dx.doi.org/10.1117/1.JBO.24.11.115002

# [Yan2019] Shijie Yan, Anh Phong Tran, Qianqian Fang*, "A dual-grid mesh-based Monte Carlo algorithm for efficient photon transport simulations in complex 3-D media," J. of Biomedical Optics, 24(2), 020503 (2019).
$Summary: Dual-grid MMC for faster and more accurate mesh-based simulations
$Download: http://dx.doi.org/10.1117/1.JBO.24.2.020503

# [Yao2018] Ruoyang Yao, Xavier Intes, Qianqian Fang*, "A direct approach to compute Jacobians for diffuse optical tomography using perturbation Monte Carlo-based photon 'replay'," Biomed. Optics Express 9(10), 4588-4603 (2018)
$Summary: Building Jacobians with replay in MCX/MMC
$Download: https://www.osapublishing.org/boe/abstract.cfm?uri=boe-9-10-4588

# [Yao2016] Ruoyang Yao, Xavier Intes, Qianqian Fang*, "Generalized mesh-based Monte Carlo for wide-field illumination and detection via mesh retessellation," Biomed. Optics Express, 7(1), 171-184, (2016)
$Summary: Widefield MMC
$Download: https://www.osapublishing.org/boe/abstract.cfm?uri=boe-7-1-171

# [Fang2012] Qianqian Fang and David R. Kaeli, "Accelerating mesh-based Monte Carlo method on modern CPU architectures ," Biomed. Opt. Express 3(12), 3223-3230 (2012)
$Summary: SIMD MMC
$Download: https://www.osapublishing.org/boe/abstract.cfm?uri=boe-3-12-3223

# [Fang2011] Qianqian Fang, "Comment on 'A study on tetrahedron-based inhomogeneous Monte-Carlo optical simulation'," Biomed. Opt. Express, vol. 2, issue 5, pp. 1258-1264, 2011.
$Summary: MMC ray-tracing comparisons
$Download: https://www.osapublishing.org/boe/abstract.cfm?uri=boe-2-5-1258

# [Fang2010] Qianqian Fang, "Mesh-based Monte Carlo method using fast ray-tracing in Plücker coordinates," Biomed. Opt. Express 1(1), 165-175 (2010)
$Summary: original MMC paper
$Download: https://www.osapublishing.org/boe/abstract.cfm?uri=boe-1-1-165

-- "Applications" --
# [Yuan2020] Yaoshen Yuan, Paolo Cassano, Matthew Pias, Qianqian Fang*, (2020) "Transcranial photobiomodulation with near-infrared light from childhood to elderliness: simulation of dosimetry,", Neurophotonics, 7(1), 015009
$Summary: PBM dosage over lifespan
$Download: https://doi.org/10.1117/1.NPh.7.1.015009

# [Brain2Mesh2020] Anh Phong Tran, Shijie Yan, Qianqian Fang*, (2020) "Improving model-based fNIRS analysis using mesh-based anatomical and light-transport models," Neurophotonics, 7(1), 015008
$Summary: Brain2Mesh - a one-liner for brain mesh generator (http://mcx.space/brain2mesh)
$Download: https://doi.org/10.1117/1.NPh.7.1.015008

=============================================================
4 changes: 2 additions & 2 deletions inno/MCXStudio.iss
Original file line number Diff line number Diff line change
Expand Up @@ -30,11 +30,11 @@ AppSupportURL={#MyAppURL}
AppUpdatesURL={#MyAppURL}
DefaultDirName={autopf}\{#MyAppDir}
DisableProgramGroupPage=yes
LicenseFile=..\MCXSuite\mcx\LICENSE.txt
LicenseFile=..\MCXSuite\mcx\NOTICE.txt
InfoAfterFile=..\README.txt
; Uncomment the following line to run in non administrative install mode (install for current user only.)
;PrivilegesRequired=lowest
OutputBaseFilename=mcxstudio
OutputBaseFilename={#MyAppDir}-{#MyAppVersion}
Compression=lzma
SolidCompression=yes
WizardStyle=modern
Expand Down
Loading

0 comments on commit 4bda593

Please sign in to comment.