This is a representation learning method for predicting protein-protein interactions (PPI). Our paper about this method is currently under review. The auto-encoder part of our model is improved based on the implementation by T. N. Kifp. You can find the source code here Graph Auto-Encoders
- Python 2.7
- TensorFlow
- Keras
- networkx
- scipy
- numpy
cd src
python main.py
You can specify the dataset by using "--dataset E.coli", for example, you can also specify the parameter weight rate by using "--wr 10.0"