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MooseVariableData.C
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MooseVariableData.C
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//* This file is part of the MOOSE framework
//* https://www.mooseframework.org
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html
#include "MooseVariableData.h"
#include "MooseVariableField.h"
#include "Assembly.h"
#include "MooseError.h"
#include "DisplacedSystem.h"
#include "TimeIntegrator.h"
#include "MooseVariableFE.h"
#include "MooseTypes.h"
#include "DualRealOps.h"
#include "libmesh/quadrature.h"
#include "libmesh/fe_base.h"
#include "libmesh/system.h"
#include "libmesh/type_n_tensor.h"
template <typename OutputType>
MooseVariableData<OutputType>::MooseVariableData(const MooseVariableField<OutputType> & var,
SystemBase & sys,
THREAD_ID tid,
Moose::ElementType element_type,
const QBase * const & qrule_in,
const QBase * const & qrule_face_in,
const Node * const & node,
const Elem * const & elem)
: MooseVariableDataBase<OutputType>(var, sys, tid),
_fe_type(_var.feType()),
_var_num(_var.number()),
_assembly(_subproblem.assembly(_tid, var.kind() == Moose::VAR_NONLINEAR ? sys.number() : 0)),
_element_type(element_type),
_ad_zero(0),
_need_ad_u_dot(false),
_need_ad_u_dotdot(false),
_need_second(false),
_need_second_old(false),
_need_second_older(false),
_need_second_previous_nl(false),
_need_curl(false),
_need_curl_old(false),
_need_curl_older(false),
_need_div(false),
_need_div_old(false),
_need_div_older(false),
_need_ad(false),
_need_ad_u(false),
_need_ad_grad_u(false),
_need_ad_grad_u_dot(false),
_need_ad_second_u(false),
_has_dof_indices(false),
_qrule(qrule_in),
_qrule_face(qrule_face_in),
_use_dual(var.useDual()),
_second_phi_assembly_method(nullptr),
_second_phi_face_assembly_method(nullptr),
_curl_phi_assembly_method(nullptr),
_curl_phi_face_assembly_method(nullptr),
_div_phi_assembly_method(nullptr),
_div_phi_face_assembly_method(nullptr),
_ad_grad_phi_assembly_method(nullptr),
_ad_grad_phi_face_assembly_method(nullptr),
_time_integrator(nullptr),
_node(node),
_elem(elem),
_displaced(dynamic_cast<const DisplacedSystem *>(&_sys) ? true : false),
_current_side(_assembly.side())
{
// FIXME: continuity of FE type seems equivalent with the definition of nodal variables.
// Continuity does not depend on the FE dimension, so we just pass in a valid dimension.
if (_fe_type.family == NEDELEC_ONE || _fe_type.family == LAGRANGE_VEC ||
_fe_type.family == MONOMIAL_VEC || _fe_type.family == RAVIART_THOMAS)
_continuity = _assembly.getVectorFE(_fe_type, _sys.mesh().dimension())->get_continuity();
else
_continuity = _assembly.getFE(_fe_type, _sys.mesh().dimension())->get_continuity();
_is_nodal = (_continuity == C_ZERO || _continuity == C_ONE);
_time_integrator = _sys.getTimeIntegrator();
switch (_element_type)
{
case Moose::ElementType::Element:
{
_phi_assembly_method = &Assembly::fePhi<OutputShape>;
_phi_face_assembly_method = &Assembly::fePhiFace<OutputShape>;
_grad_phi_assembly_method = &Assembly::feGradPhi<OutputShape>;
_grad_phi_face_assembly_method = &Assembly::feGradPhiFace<OutputShape>;
_second_phi_assembly_method = &Assembly::feSecondPhi<OutputShape>;
_second_phi_face_assembly_method = &Assembly::feSecondPhiFace<OutputShape>;
_curl_phi_assembly_method = &Assembly::feCurlPhi<OutputShape>;
_curl_phi_face_assembly_method = &Assembly::feCurlPhiFace<OutputShape>;
_div_phi_assembly_method = &Assembly::feDivPhi<OutputShape>;
_div_phi_face_assembly_method = &Assembly::feDivPhiFace<OutputShape>;
_ad_grad_phi_assembly_method = &Assembly::feADGradPhi<OutputShape>;
_ad_grad_phi_face_assembly_method = &Assembly::feADGradPhiFace<OutputShape>;
_ad_grad_phi = &_ad_grad_phi_assembly_method(_assembly, _fe_type);
_ad_grad_phi_face = &_ad_grad_phi_face_assembly_method(_assembly, _fe_type);
break;
}
case Moose::ElementType::Neighbor:
{
_phi_assembly_method = &Assembly::fePhiNeighbor<OutputShape>;
_phi_face_assembly_method = &Assembly::fePhiFaceNeighbor<OutputShape>;
_grad_phi_assembly_method = &Assembly::feGradPhiNeighbor<OutputShape>;
_grad_phi_face_assembly_method = &Assembly::feGradPhiFaceNeighbor<OutputShape>;
_second_phi_assembly_method = &Assembly::feSecondPhiNeighbor<OutputShape>;
_second_phi_face_assembly_method = &Assembly::feSecondPhiFaceNeighbor<OutputShape>;
_curl_phi_assembly_method = &Assembly::feCurlPhiNeighbor<OutputShape>;
_curl_phi_face_assembly_method = &Assembly::feCurlPhiFaceNeighbor<OutputShape>;
_div_phi_assembly_method = &Assembly::feDivPhiNeighbor<OutputShape>;
_div_phi_face_assembly_method = &Assembly::feDivPhiFaceNeighbor<OutputShape>;
_ad_grad_phi = nullptr;
_ad_grad_phi_face = nullptr;
break;
}
case Moose::ElementType::Lower:
{
if (_use_dual)
{
_phi_assembly_method = &Assembly::feDualPhiLower<OutputType>;
_phi_face_assembly_method = &Assembly::feDualPhiLower<OutputType>; // Place holder
_grad_phi_assembly_method = &Assembly::feGradDualPhiLower<OutputType>;
_grad_phi_face_assembly_method = &Assembly::feGradDualPhiLower<OutputType>; // Place holder
}
else
{
_phi_assembly_method = &Assembly::fePhiLower<OutputType>;
_phi_face_assembly_method = &Assembly::fePhiLower<OutputType>; // Place holder
_grad_phi_assembly_method = &Assembly::feGradPhiLower<OutputType>;
_grad_phi_face_assembly_method = &Assembly::feGradPhiLower<OutputType>; // Place holder
}
_ad_grad_phi = nullptr;
_ad_grad_phi_face = nullptr;
break;
}
}
_phi = &_phi_assembly_method(_assembly, _fe_type);
_phi_face = &_phi_face_assembly_method(_assembly, _fe_type);
_grad_phi = &_grad_phi_assembly_method(_assembly, _fe_type);
_grad_phi_face = &_grad_phi_face_assembly_method(_assembly, _fe_type);
}
template <typename OutputType>
void
MooseVariableData<OutputType>::setGeometry(Moose::GeometryType gm_type)
{
switch (gm_type)
{
case Moose::Volume:
{
_current_qrule = _qrule;
_current_phi = _phi;
_current_grad_phi = _grad_phi;
_current_second_phi = _second_phi;
_current_curl_phi = _curl_phi;
_current_div_phi = _div_phi;
_current_ad_grad_phi = _ad_grad_phi;
break;
}
case Moose::Face:
{
_current_qrule = _qrule_face;
_current_phi = _phi_face;
_current_grad_phi = _grad_phi_face;
_current_second_phi = _second_phi_face;
_current_curl_phi = _curl_phi_face;
_current_div_phi = _div_phi_face;
_current_ad_grad_phi = _ad_grad_phi_face;
break;
}
}
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableValue &
MooseVariableData<OutputType>::uDot() const
{
if (_sys.solutionUDot())
{
_need_u_dot = true;
return _u_dot;
}
else
mooseError("MooseVariableFE: Time derivative of solution (`u_dot`) is not stored. Please set "
"uDotRequested() to true in FEProblemBase before requesting `u_dot`.");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableValue &
MooseVariableData<OutputType>::uDotDot() const
{
if (_sys.solutionUDotDot())
{
_need_u_dotdot = true;
return _u_dotdot;
}
else
mooseError("MooseVariableFE: Second time derivative of solution (`u_dotdot`) is not stored. "
"Please set uDotDotRequested() to true in FEProblemBase before requesting "
"`u_dotdot`.");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableValue &
MooseVariableData<OutputType>::uDotOld() const
{
if (_sys.solutionUDotOld())
{
_need_u_dot_old = true;
return _u_dot_old;
}
else
mooseError("MooseVariableFE: Old time derivative of solution (`u_dot_old`) is not stored. "
"Please set uDotOldRequested() to true in FEProblemBase before requesting "
"`u_dot_old`.");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableValue &
MooseVariableData<OutputType>::uDotDotOld() const
{
if (_sys.solutionUDotDotOld())
{
_need_u_dotdot_old = true;
return _u_dotdot_old;
}
else
mooseError("MooseVariableFE: Old second time derivative of solution (`u_dotdot_old`) is not "
"stored. Please set uDotDotOldRequested() to true in FEProblemBase before "
"requesting `u_dotdot_old`");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableGradient &
MooseVariableData<OutputType>::gradSlnDot() const
{
if (_sys.solutionUDot())
{
_need_grad_dot = true;
return _grad_u_dot;
}
else
mooseError("MooseVariableFE: Time derivative of solution (`u_dot`) is not stored. Please set "
"uDotRequested() to true in FEProblemBase before requesting `u_dot`.");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableGradient &
MooseVariableData<OutputType>::gradSlnDotDot() const
{
if (_sys.solutionUDotDot())
{
_need_grad_dotdot = true;
return _grad_u_dotdot;
}
else
mooseError("MooseVariableFE: Second time derivative of solution (`u_dotdot`) is not stored. "
"Please set uDotDotRequested() to true in FEProblemBase before requesting "
"`u_dotdot`.");
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableSecond &
MooseVariableData<OutputType>::secondSln(Moose::SolutionState state) const
{
secondPhi();
secondPhiFace();
switch (state)
{
case Moose::Current:
{
_need_second = true;
return _second_u;
}
case Moose::Old:
{
_need_second_old = true;
return _second_u_old;
}
case Moose::Older:
{
_need_second_older = true;
return _second_u_older;
}
case Moose::PreviousNL:
{
_need_second_previous_nl = true;
return _second_u_previous_nl;
}
default:
// We should never get here but gcc requires that we have a default. See
// htpps://stackoverflow.com/questions/18680378/after-defining-case-for-all-enum-values-compiler-still-says-control-reaches-e
mooseError("Unknown SolutionState!");
}
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableCurl &
MooseVariableData<OutputType>::curlSln(Moose::SolutionState state) const
{
curlPhi();
curlPhiFace();
switch (state)
{
case Moose::Current:
{
_need_curl = true;
return _curl_u;
}
case Moose::Old:
{
_need_curl_old = true;
return _curl_u_old;
}
case Moose::Older:
{
_need_curl_older = true;
return _curl_u_older;
}
default:
mooseError("We don't currently support curl from the previous non-linear iteration");
}
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariableDivergence &
MooseVariableData<OutputType>::divSln(Moose::SolutionState state) const
{
divPhi();
divPhiFace();
switch (state)
{
case Moose::Current:
{
_need_div = true;
return _div_u;
}
case Moose::Old:
{
_need_div_old = true;
return _div_u_old;
}
case Moose::Older:
{
_need_div_older = true;
return _div_u_older;
}
default:
mooseError("We don't currently support divergence from the previous non-linear iteration");
}
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiSecond &
MooseVariableData<OutputType>::secondPhi() const
{
_second_phi = &_second_phi_assembly_method(_assembly, _fe_type);
return *_second_phi;
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiSecond &
MooseVariableData<OutputType>::secondPhiFace() const
{
_second_phi_face = &_second_phi_face_assembly_method(_assembly, _fe_type);
return *_second_phi_face;
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiCurl &
MooseVariableData<OutputType>::curlPhi() const
{
_curl_phi = &_curl_phi_assembly_method(_assembly, _fe_type);
return *_curl_phi;
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiCurl &
MooseVariableData<OutputType>::curlPhiFace() const
{
_curl_phi_face = &_curl_phi_face_assembly_method(_assembly, _fe_type);
return *_curl_phi_face;
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiDivergence &
MooseVariableData<OutputType>::divPhi() const
{
_div_phi = &_div_phi_assembly_method(_assembly, _fe_type);
return *_div_phi;
}
template <typename OutputType>
const typename MooseVariableData<OutputType>::FieldVariablePhiDivergence &
MooseVariableData<OutputType>::divPhiFace() const
{
_div_phi_face = &_div_phi_face_assembly_method(_assembly, _fe_type);
return *_div_phi_face;
}
template <typename OutputType>
void
MooseVariableData<OutputType>::computeValues()
{
unsigned int num_dofs = _dof_indices.size();
if (num_dofs > 0)
fetchDoFValues();
bool is_transient = _subproblem.isTransient();
unsigned int nqp = _current_qrule->n_points();
auto && active_coupleable_matrix_tags = _subproblem.getActiveFEVariableCoupleableMatrixTags(_tid);
for (auto tag : _required_vector_tags)
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag].resize(nqp);
if (_need_vector_tag_grad[tag])
_vector_tag_grad[tag].resize(nqp);
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag].resize(nqp);
if (_need_second)
_second_u.resize(nqp);
if (_need_curl)
_curl_u.resize(nqp);
if (_need_div)
_div_u.resize(nqp);
if (_need_second_previous_nl)
_second_u_previous_nl.resize(nqp);
if (is_transient)
{
if (_need_u_dot)
_u_dot.resize(nqp);
if (_need_u_dotdot)
_u_dotdot.resize(nqp);
if (_need_u_dot_old)
_u_dot_old.resize(nqp);
if (_need_u_dotdot_old)
_u_dotdot_old.resize(nqp);
if (_need_du_dot_du)
_du_dot_du.resize(nqp);
if (_need_du_dotdot_du)
_du_dotdot_du.resize(nqp);
if (_need_grad_dot)
_grad_u_dot.resize(nqp);
if (_need_grad_dotdot)
_grad_u_dotdot.resize(nqp);
if (_need_second_old)
_second_u_old.resize(nqp);
if (_need_curl_old)
_curl_u_old.resize(nqp);
if (_need_div_old)
_div_u_old.resize(nqp);
if (_need_second_older)
_second_u_older.resize(nqp);
}
for (unsigned int i = 0; i < nqp; ++i)
{
for (auto tag : _required_vector_tags)
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag][i] = 0;
if (_need_vector_tag_grad[tag])
_vector_tag_grad[tag][i] = 0;
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag][i] = 0;
if (_need_second)
_second_u[i] = 0;
if (_need_curl)
_curl_u[i] = 0;
if (_need_div)
_div_u[i] = 0;
if (_need_second_previous_nl)
_second_u_previous_nl[i] = 0;
if (is_transient)
{
if (_need_u_dot)
_u_dot[i] = 0;
if (_need_u_dotdot)
_u_dotdot[i] = 0;
if (_need_u_dot_old)
_u_dot_old[i] = 0;
if (_need_u_dotdot_old)
_u_dotdot_old[i] = 0;
if (_need_du_dot_du)
_du_dot_du[i] = 0;
if (_need_du_dotdot_du)
_du_dotdot_du[i] = 0;
if (_need_grad_dot)
_grad_u_dot[i] = 0;
if (_need_grad_dotdot)
_grad_u_dotdot[i] = 0;
if (_need_second_old)
_second_u_old[i] = 0;
if (_need_second_older)
_second_u_older[i] = 0;
if (_need_curl_old)
_curl_u_old[i] = 0;
if (_need_div_old)
_div_u_old[i] = 0;
}
}
bool second_required =
_need_second || _need_second_old || _need_second_older || _need_second_previous_nl;
bool curl_required = _need_curl || _need_curl_old;
bool div_required = _need_div || _need_div_old;
for (unsigned int i = 0; i < num_dofs; i++)
{
for (unsigned int qp = 0; qp < nqp; qp++)
{
const OutputType phi_local = (*_current_phi)[i][qp];
const typename OutputTools<OutputType>::OutputGradient dphi_qp = (*_current_grad_phi)[i][qp];
if (is_transient)
{
if (_need_u_dot)
_u_dot[qp] += phi_local * _dof_values_dot[i];
if (_need_u_dotdot)
_u_dotdot[qp] += phi_local * _dof_values_dotdot[i];
if (_need_u_dot_old)
_u_dot_old[qp] += phi_local * _dof_values_dot_old[i];
if (_need_u_dotdot_old)
_u_dotdot_old[qp] += phi_local * _dof_values_dotdot_old[i];
if (_need_grad_dot)
_grad_u_dot[qp].add_scaled(dphi_qp, _dof_values_dot[i]);
if (_need_grad_dotdot)
_grad_u_dotdot[qp].add_scaled(dphi_qp, _dof_values_dotdot[i]);
if (_need_du_dot_du)
_du_dot_du[qp] = _dof_du_dot_du[i];
if (_need_du_dotdot_du)
_du_dotdot_du[qp] = _dof_du_dotdot_du[i];
}
if (second_required)
{
mooseAssert(
_current_second_phi,
"We're requiring a second calculation but have not set a second shape function!");
const typename OutputTools<OutputType>::OutputSecond d2phi_local =
(*_current_second_phi)[i][qp];
if (_need_second)
_second_u[qp].add_scaled(d2phi_local, _vector_tags_dof_u[_solution_tag][i]);
if (_need_second_previous_nl)
_second_u_previous_nl[qp].add_scaled(d2phi_local,
_vector_tags_dof_u[_previous_nl_solution_tag][i]);
if (is_transient)
{
if (_need_second_old)
_second_u_old[qp].add_scaled(d2phi_local, _vector_tags_dof_u[_old_solution_tag][i]);
if (_need_second_older)
_second_u_older[qp].add_scaled(d2phi_local, _vector_tags_dof_u[_older_solution_tag][i]);
}
}
if (curl_required)
{
mooseAssert(_current_curl_phi,
"We're requiring a curl calculation but have not set a curl shape function!");
const OutputType curl_phi_local = (*_current_curl_phi)[i][qp];
if (_need_curl)
_curl_u[qp] += curl_phi_local * _vector_tags_dof_u[_solution_tag][i];
if (is_transient && _need_curl_old)
_curl_u_old[qp] += curl_phi_local * _vector_tags_dof_u[_old_solution_tag][i];
}
if (div_required)
{
mooseAssert(
_current_div_phi,
"We're requiring a divergence calculation but have not set a div shape function!");
const OutputShapeDivergence div_phi_local = (*_current_div_phi)[i][qp];
if (_need_div)
_div_u[qp] += div_phi_local * _vector_tags_dof_u[_solution_tag][i];
if (is_transient && _need_div_old)
_div_u_old[qp] += div_phi_local * _vector_tags_dof_u[_old_solution_tag][i];
}
for (auto tag : _required_vector_tags)
{
if (_sys.hasVector(tag) && _sys.getVector(tag).closed())
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag][qp] += phi_local * _vector_tags_dof_u[tag][i];
if (_need_vector_tag_grad[tag])
_vector_tag_grad[tag][qp].add_scaled(dphi_qp, _vector_tags_dof_u[tag][i]);
}
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag][qp] += phi_local * _matrix_tags_dof_u[tag][i];
}
}
// Automatic differentiation
if (_need_ad)
computeAD(num_dofs, nqp);
}
template <>
void
MooseVariableData<RealEigenVector>::computeValues()
{
unsigned int num_dofs = _dof_indices.size();
if (num_dofs > 0)
fetchDoFValues();
bool is_transient = _subproblem.isTransient();
unsigned int nqp = _current_qrule->n_points();
auto && active_coupleable_matrix_tags = _subproblem.getActiveFEVariableCoupleableMatrixTags(_tid);
// Map grad_phi using Eigen so that we can perform array operations easier
if (_qrule == _current_qrule)
{
_mapped_grad_phi.resize(num_dofs);
for (unsigned int i = 0; i < num_dofs; i++)
{
_mapped_grad_phi[i].resize(nqp, Eigen::Map<RealDIMValue>(nullptr));
for (unsigned int qp = 0; qp < nqp; qp++)
// Note: this does NOT do any allocation. It is "reconstructing" the object in place
new (&_mapped_grad_phi[i][qp])
Eigen::Map<RealDIMValue>(const_cast<Real *>(&(*_current_grad_phi)[i][qp](0)));
}
}
else
{
_mapped_grad_phi_face.resize(num_dofs);
for (unsigned int i = 0; i < num_dofs; i++)
{
_mapped_grad_phi_face[i].resize(nqp, Eigen::Map<RealDIMValue>(nullptr));
for (unsigned int qp = 0; qp < nqp; qp++)
// Note: this does NOT do any allocation. It is "reconstructing" the object in place
new (&_mapped_grad_phi_face[i][qp])
Eigen::Map<RealDIMValue>(const_cast<Real *>(&(*_current_grad_phi)[i][qp](0)));
}
}
for (auto tag : _required_vector_tags)
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag].resize(nqp);
if (_need_vector_tag_grad[tag])
_vector_tag_grad[tag].resize(nqp);
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag].resize(nqp);
if (_need_second)
_second_u.resize(nqp);
if (_need_curl)
_curl_u.resize(nqp);
if (_need_div)
_div_u.resize(nqp);
if (_need_second_previous_nl)
_second_u_previous_nl.resize(nqp);
if (is_transient)
{
if (_need_u_dot)
_u_dot.resize(nqp);
if (_need_u_dotdot)
_u_dotdot.resize(nqp);
if (_need_u_dot_old)
_u_dot_old.resize(nqp);
if (_need_u_dotdot_old)
_u_dotdot_old.resize(nqp);
if (_need_du_dot_du)
_du_dot_du.resize(nqp);
if (_need_du_dotdot_du)
_du_dotdot_du.resize(nqp);
if (_need_grad_dot)
_grad_u_dot.resize(nqp);
if (_need_grad_dotdot)
_grad_u_dotdot.resize(nqp);
if (_need_second_old)
_second_u_old.resize(nqp);
if (_need_curl_old)
_curl_u_old.resize(nqp);
if (_need_div_old)
_div_u_old.resize(nqp);
if (_need_second_older)
_second_u_older.resize(nqp);
}
for (unsigned int i = 0; i < nqp; ++i)
{
for (auto tag : _required_vector_tags)
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag][i].setZero(_count);
if (_need_vector_tag_grad[tag])
_vector_tag_grad[tag][i].setZero(_count, LIBMESH_DIM);
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag][i].setZero(_count);
if (_need_second)
_second_u[i].setZero(_count, LIBMESH_DIM * LIBMESH_DIM);
if (_need_curl)
_curl_u[i].setZero(_count);
if (_need_div)
_div_u[i].setZero(_count);
if (_need_second_previous_nl)
_second_u_previous_nl[i].setZero(_count, LIBMESH_DIM * LIBMESH_DIM);
if (is_transient)
{
if (_need_u_dot)
_u_dot[i].setZero(_count);
if (_need_u_dotdot)
_u_dotdot[i].setZero(_count);
if (_need_u_dot_old)
_u_dot_old[i].setZero(_count);
if (_need_u_dotdot_old)
_u_dotdot_old[i].setZero(_count);
if (_need_du_dot_du)
_du_dot_du[i] = 0;
if (_need_du_dotdot_du)
_du_dotdot_du[i] = 0;
if (_need_grad_dot)
_grad_u_dot[i].setZero(_count, LIBMESH_DIM);
if (_need_grad_dotdot)
_grad_u_dotdot[i].setZero(_count, LIBMESH_DIM);
if (_need_second_old)
_second_u_old[i].setZero(_count, LIBMESH_DIM * LIBMESH_DIM);
if (_need_second_older)
_second_u_older[i].setZero(_count, LIBMESH_DIM * LIBMESH_DIM);
if (_need_curl_old)
_curl_u_old[i].setZero(_count);
if (_need_div_old)
_div_u_old[i].setZero(_count);
}
}
bool second_required =
_need_second || _need_second_old || _need_second_older || _need_second_previous_nl;
bool curl_required = _need_curl || _need_curl_old;
bool div_required = _need_div || _need_div_old;
for (unsigned int i = 0; i < num_dofs; i++)
{
for (unsigned int qp = 0; qp < nqp; qp++)
{
const OutputShape phi_local = (*_current_phi)[i][qp];
const OutputShapeGradient dphi_qp = (*_current_grad_phi)[i][qp];
if (is_transient)
{
if (_need_u_dot)
_u_dot[qp] += phi_local * _dof_values_dot[i];
if (_need_u_dotdot)
_u_dotdot[qp] += phi_local * _dof_values_dotdot[i];
if (_need_u_dot_old)
_u_dot_old[qp] += phi_local * _dof_values_dot_old[i];
if (_need_u_dotdot_old)
_u_dotdot_old[qp] += phi_local * _dof_values_dotdot_old[i];
if (_need_grad_dot)
for (const auto d : make_range(Moose::dim))
_grad_u_dot[qp].col(d) += dphi_qp(d) * _dof_values_dot[i];
if (_need_grad_dotdot)
for (const auto d : make_range(Moose::dim))
_grad_u_dotdot[qp].col(d) += dphi_qp(d) * _dof_values_dotdot[i];
if (_need_du_dot_du)
_du_dot_du[qp] = _dof_du_dot_du[i];
if (_need_du_dotdot_du)
_du_dotdot_du[qp] = _dof_du_dotdot_du[i];
}
if (second_required)
{
mooseAssert(
_current_second_phi,
"We're requiring a second calculation but have not set a second shape function!");
const RealTensorValue d2phi_local = (*_current_second_phi)[i][qp];
if (_need_second)
for (unsigned int d = 0, d1 = 0; d1 < LIBMESH_DIM; ++d1)
for (unsigned int d2 = 0; d2 < LIBMESH_DIM; ++d2)
_second_u[qp].col(d++) += d2phi_local(d1, d2) * _vector_tags_dof_u[_solution_tag][i];
if (_need_second_previous_nl)
for (unsigned int d = 0, d1 = 0; d1 < LIBMESH_DIM; ++d1)
for (unsigned int d2 = 0; d2 < LIBMESH_DIM; ++d2)
_second_u_previous_nl[qp].col(d++) +=
d2phi_local(d1, d2) * _vector_tags_dof_u[_previous_nl_solution_tag][i];
if (is_transient)
{
if (_need_second_old)
for (unsigned int d = 0, d1 = 0; d1 < LIBMESH_DIM; ++d1)
for (unsigned int d2 = 0; d2 < LIBMESH_DIM; ++d2)
_second_u_old[qp].col(d++) +=
d2phi_local(d1, d2) * _vector_tags_dof_u[_old_solution_tag][i];
if (_need_second_older)
for (unsigned int d = 0, d1 = 0; d1 < LIBMESH_DIM; ++d1)
for (unsigned int d2 = 0; d2 < LIBMESH_DIM; ++d2)
_second_u_older[qp].col(d++) +=
d2phi_local(d1, d2) * _vector_tags_dof_u[_older_solution_tag][i];
}
}
if (curl_required)
{
mooseAssert(_current_curl_phi,
"We're requiring a curl calculation but have not set a curl shape function!");
const auto curl_phi_local = (*_current_curl_phi)[i][qp];
if (_need_curl)
_curl_u[qp] += curl_phi_local * _vector_tags_dof_u[_solution_tag][i];
if (is_transient && _need_curl_old)
_curl_u_old[qp] += curl_phi_local * _vector_tags_dof_u[_old_solution_tag][i];
}
if (div_required)
{
mooseAssert(_current_div_phi,
"We're requiring a divergence calculation but have not set a divergence shape "
"function!");
const auto div_phi_local = (*_current_div_phi)[i][qp];
if (_need_div)
_div_u[qp] += div_phi_local * _vector_tags_dof_u[_solution_tag][i];
if (is_transient && _need_div_old)
_div_u_old[qp] += div_phi_local * _vector_tags_dof_u[_old_solution_tag][i];
}
for (auto tag : _required_vector_tags)
{
if (_need_vector_tag_u[tag])
_vector_tag_u[tag][qp] += phi_local * _vector_tags_dof_u[tag][i];
if (_need_vector_tag_grad[tag])
for (const auto d : make_range(Moose::dim))
_vector_tag_grad[tag][qp].col(d) += dphi_qp(d) * _vector_tags_dof_u[tag][i];
}
for (auto tag : active_coupleable_matrix_tags)
if (_need_matrix_tag_u[tag])
_matrix_tag_u[tag][qp] += phi_local * _matrix_tags_dof_u[tag][i];
}
}
// No AD support for array variable yet.
}
template <typename OutputType>
void
MooseVariableData<OutputType>::computeMonomialValues()
{
if (_dof_indices.size() == 0)
return;
if (_elem->p_level())
{
// The optimizations in this routine are not appropriate after p-refinement
computeValues();
return;
}
bool is_transient = _subproblem.isTransient();
unsigned int nqp = _current_qrule->n_points();
if (_need_second)
_second_u.resize(nqp);
if (_need_second_previous_nl)
_second_u_previous_nl.resize(nqp);
if (is_transient)
{
if (_need_u_dot)
_u_dot.resize(nqp);
if (_need_u_dotdot)
_u_dotdot.resize(nqp);
if (_need_u_dot_old)
_u_dot_old.resize(nqp);
if (_need_u_dotdot_old)
_u_dotdot_old.resize(nqp);