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BIDS validator and linter

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CPP_BIDS

• CPP_BIDS
• Output format
  • Modality agnostic aspect
• Documentation
• Contributing
  • Guidestyle
  • BIDS naming convention
  • Change log
  • Contributors ✨

A set of function for matlab and octave to create BIDS-compatible folder structure and filenames for the output of behavioral, EEG, fMRI, eyetracking studies.

Documentation

• Installation
• How to use it: jupyter notebooks
• General documentation

Contributing

Feel free to open issues to report a bug and ask for improvements.

If you want to contribute, have a look at our contributing guidelines that are meant to guide you and help you get started. If something is not clear or you get stuck: it is more likely we did not do good enough a job at explaining things. So do not hesitate to open an issue, just to ask for clarification.

Style guide

• We use camelCase.

• We keep the McCabe complexity as reported by the check_my_code function below 15.

• We use the MISS_HIT linter to automatically fix some linting issues.

BIDS naming convention

Here are the naming templates used.

• Behavior

sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_events.tsv
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_events.json
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_beh.tsv
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_beh.json

• BOLD

sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_ce-<label>][_dir-<label>][_rec-<label>][_run-<index>][_echo-<index>]_<contrast_label>.nii[.gz]

• iEEG

sub-<label>[_ses-<label>]_task-<task_label>[_run-<index>]_ieeg.json

• EEG

sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.json

• MEG

???

• Eyetracker

current format <matches>_recording-eyetracking_physio.tsv.gz

future BEP format in a dedicated eyetracker folder

sub-<participant_label>[_ses-<label>][_acq-<label>]_task-<task_label>_eyetrack.<manufacturer_specific_extension>

• Stim and physio

<matches>[_recording-<label>]_physio.tsv.gz
<matches>[_recording-<label>]_physio.json
<matches>[_recording-<label>]_stim.tsv.gz
<matches>[_recording-<label>]_stim.json

Change log

Contributors ✨

Thanks goes to these wonderful people (emoji key):

CerenB 💻 🎨 📖 📓 🤔 🐛

marcobarilari 💻 🎨 📖 📓 🤔 🐛

Remi Gau 💻 🎨 📖 🐛 📓 🤔 🚇 🚧 ⚠️ 💬

Tomas Lenc 💻 🤔 ⚠️

This project follows the all-contributors specification. Contributions of any kind welcome!