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This repository has been archived by the owner on Sep 12, 2018. It is now read-only.
So one issue with this is performance, obviously (displaying one large assembly graph is taxing enough). Another issue is visual "alignment" -- how do we ensure that the two assembly graphs are laid out in somewhat similar ways? Ideally this would be used for comparative purposes, but I'm not sure what exact form those comparisons could take (e.g. broad structural differences [a scale from "mostly linear" to "complex"], DNA comparison via BLAST search [???]).
See http://js.cytoscape.org/demos/310dca83ba6970812dd0/ for reference as to what this could look like. This could be really cool.
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