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Displaying multiple assembly files simultaneously #4

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fedarko opened this issue Jul 21, 2016 · 2 comments
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Displaying multiple assembly files simultaneously #4

fedarko opened this issue Jul 21, 2016 · 2 comments
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@fedarko
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fedarko commented Jul 21, 2016

See http://js.cytoscape.org/demos/310dca83ba6970812dd0/ for reference as to what this could look like. This could be really cool.

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fedarko commented Jan 5, 2017

So one issue with this is performance, obviously (displaying one large assembly graph is taxing enough). Another issue is visual "alignment" -- how do we ensure that the two assembly graphs are laid out in somewhat similar ways? Ideally this would be used for comparative purposes, but I'm not sure what exact form those comparisons could take (e.g. broad structural differences [a scale from "mostly linear" to "complex"], DNA comparison via BLAST search [???]).

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fedarko commented Aug 9, 2017

This issue was moved to marbl/MetagenomeScope#2

@fedarko fedarko closed this as completed Aug 9, 2017
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