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CPPL SPM12 Pipeline

This is a set of functions to fMRI analysis on a BIDS data set using SPM12.

This can perform:

• slice timing correction,

• spatial preprocessing:

  • realignment, coregistration func to anat, anat segmentation, normalization to MNI space

  • realignm and unwarp, coregistration func to anat, anat segmentation

• smoothing,

• Quality analysis:

  • for anatomical data
  • for functional data

• GLM at the subject level

• GLM at the group level à la SPM (meaning using a summary statistics approach).

Please see our documentation for more info.

The core functions are in the src folder.

Installation

Dependencies

Make sure that the following toolboxes are installed and added to the matlab path.

For instructions see the following links:

Dependencies	Used version
Matlab	20???
or octave	4.?
SPM12	v7487
Tools for NIfTI and ANALYZE image toolbox	NA
spmup	NA

Contributors

Thanks goes to these wonderful people (emoji key):

CerenB 🐛 🖋 📖 💻 👀

Fede F. 🐛

Mohamed Rezk 💻 👀 🎨

OliColli 💻 🎨 📖

Remi Gau 💻 📖 🚇 🎨 👀 🐛 ⚠️

anege 💻 🎨

marcobarilari 💻 🎨 👀 📖 ⚠️ 🐛

This project follows the all-contributors specification. Contributions of any kind welcome!