Prudhomm/issue1626 #1629

prudhomm · 2021-06-04T12:51:57Z

Have you checked to ensure there aren't other open Pull Requests for the same change?
Have you added an explanation of what your changes do and why you'd like us to include them?
Have you written new tests for your changes?
Have you successfully run the Feel++ testsuite with your changes locally?
Have you written Doxygen comments in your contribution ?

implements

Review, update python scripts and add tests #1626 Review, update python scripts and add tests
move toolboxes cases in subdirectory cases #1628 move toolboxes cases in subdirectory cases
add support for petsc4py #1646 add support for petsc4py

Fixes #1626

Fixes #1626 remove deprecated code

configure tests for pytest with fixture to configure Feel++ once for all at beginning of session

use ctest to launch sequential and parallel tests

#1628

- copy init files to binary dir - add list of toolboxes and toolboxes_core

Review, update python scripts and add tests #1626

Fixes #1626

#1626 and #1628

…rudhomm/issue1626

vincentchabannes · 2021-06-08T19:24:56Z

@prudhomm some tests fails (hdg_poisson-quarter-turn*), see here.
Also, I noticed that there are some changes in the example of cahn-hillard. It's normal or a mistake?

prudhomm · 2021-06-08T19:34:08Z

@prudhomm some tests fails (hdg_poisson-quarter-turn*), see here.

indeed I imported the work by @romainhild @thomas-saigre but it seems that something is not quite right with the hdg tests

Also, I noticed that there are some changes in the example of cahn-hillard. It's normal or a mistake?

probably a mistake

@vincentchabannes

- fix hdg test cases @vincentchabannes - fix add_subdirectory for coupledpoisson @thomas-saigre @romainhild

prudhomm · 2021-06-09T13:15:24Z

ctest -R _toolbox_
Test project /home/prudhomm/Devel/feelpp/build-cpp17-toolboxes-mor-release-nosws-nodoxygen-nomatplot/toolboxes
      Start  1: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2-np-6
 1/50 Test  #1: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2-np-6 ...............   Passed    3.96 sec
      Start  2: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2-np-1
 2/50 Test  #2: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2-np-1 ...............   Passed    4.76 sec
      Start  3: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2_alternative-np-6
 3/50 Test  #3: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2_alternative-np-6 ...   Passed    3.82 sec
      Start  4: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2_alternative-np-1
 4/50 Test  #4: feelpp_toolbox_coefficientformpdes-ThermalBridgesENISO10211_case2_alternative-np-1 ...   Passed    5.61 sec
      Start  5: feelpp_toolbox_coefficientformpdes-heat_thermo2d-np-6
 5/50 Test  #5: feelpp_toolbox_coefficientformpdes-heat_thermo2d-np-6 ................................   Passed   12.16 sec
      Start  6: feelpp_toolbox_coefficientformpdes-heat_thermo2d-np-1
 6/50 Test  #6: feelpp_toolbox_coefficientformpdes-heat_thermo2d-np-1 ................................   Passed   14.35 sec
      Start  7: feelpp_toolbox_coefficientformpdes-heat_thermo2d_alternative-np-6
 7/50 Test  #7: feelpp_toolbox_coefficientformpdes-heat_thermo2d_alternative-np-6 ....................   Passed   29.26 sec
      Start  8: feelpp_toolbox_coefficientformpdes-heat_thermo2d_alternative-np-1
 8/50 Test  #8: feelpp_toolbox_coefficientformpdes-heat_thermo2d_alternative-np-1 ....................   Passed   59.61 sec
      Start  9: feelpp_toolbox_coefficientformpdes-ElectroMagnets_HL-31_H1-np-6
 9/50 Test  #9: feelpp_toolbox_coefficientformpdes-ElectroMagnets_HL-31_H1-np-6 ......................   Passed   10.63 sec
      Start 10: feelpp_toolbox_coefficientformpdes-ElectroMagnets_HL-31_H1-np-1
10/50 Test #10: feelpp_toolbox_coefficientformpdes-ElectroMagnets_HL-31_H1-np-1 ......................   Passed   19.80 sec
      Start 11: feelpp_toolbox_coefficientformpdes-bratu-np-6
11/50 Test #11: feelpp_toolbox_coefficientformpdes-bratu-np-6 ........................................   Passed    2.14 sec
      Start 12: feelpp_toolbox_coefficientformpdes-bratu-np-1
12/50 Test #12: feelpp_toolbox_coefficientformpdes-bratu-np-1 ........................................   Passed    2.09 sec
      Start 13: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Newton-np-6
13/50 Test #13: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Newton-np-6 ...............................   Passed    6.21 sec
      Start 14: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Newton-np-1
14/50 Test #14: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Newton-np-1 ...............................   Passed   10.61 sec
      Start 15: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Newton-np-6
15/50 Test #15: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Newton-np-6 ...............................   Passed    7.29 sec
      Start 16: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Newton-np-1
16/50 Test #16: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Newton-np-1 ...............................   Passed   13.14 sec
      Start 17: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Picard-np-6
17/50 Test #17: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Picard-np-6 ...............................   Passed    9.60 sec
      Start 18: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Picard-np-1
18/50 Test #18: feelpp_toolbox_fluid-TurekHron-cfd1-P2P1G1-Picard-np-1 ...............................   Passed   16.76 sec
      Start 19: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Picard-np-6
19/50 Test #19: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Picard-np-6 ...............................   Passed   15.96 sec
      Start 20: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Picard-np-1
20/50 Test #20: feelpp_toolbox_fluid-TurekHron-cfd2-P2P1G1-Picard-np-1 ...............................   Passed   30.15 sec
      Start 21: feelpp_toolbox_fluid-TurekHron-cfd1-P1P1G1-Newton-np-6
21/50 Test #21: feelpp_toolbox_fluid-TurekHron-cfd1-P1P1G1-Newton-np-6 ...............................   Passed    6.14 sec
      Start 22: feelpp_toolbox_fluid-TurekHron-cfd1-P1P1G1-Newton-np-1
22/50 Test #22: feelpp_toolbox_fluid-TurekHron-cfd1-P1P1G1-Newton-np-1 ...............................   Passed    9.93 sec
      Start 23: feelpp_toolbox_fluid-TurekHron-cfd1-transient-BDF2-np-6
23/50 Test #23: feelpp_toolbox_fluid-TurekHron-cfd1-transient-BDF2-np-6 ..............................   Passed   29.34 sec
      Start 24: feelpp_toolbox_fluid-TurekHron-cfd1-transient-BDF2-np-1
24/50 Test #24: feelpp_toolbox_fluid-TurekHron-cfd1-transient-BDF2-np-1 ..............................   Passed   58.99 sec
      Start 25: feelpp_toolbox_fluid-TurekHron-cfd2-transient-BDF2-np-6
25/50 Test #25: feelpp_toolbox_fluid-TurekHron-cfd2-transient-BDF2-np-6 ..............................   Passed   34.20 sec
      Start 26: feelpp_toolbox_fluid-TurekHron-cfd2-transient-BDF2-np-1
26/50 Test #26: feelpp_toolbox_fluid-TurekHron-cfd2-transient-BDF2-np-1 ..............................   Passed   71.94 sec
      Start 27: feelpp_toolbox_fluid-TurekHron-cfd1-transient-CN-np-6
27/50 Test #27: feelpp_toolbox_fluid-TurekHron-cfd1-transient-CN-np-6 ................................   Passed   32.29 sec
      Start 28: feelpp_toolbox_fluid-TurekHron-cfd1-transient-CN-np-1
28/50 Test #28: feelpp_toolbox_fluid-TurekHron-cfd1-transient-CN-np-1 ................................   Passed   73.63 sec
      Start 29: feelpp_toolbox_fluid-TurekHron-cfd2-transient-CN-np-6
29/50 Test #29: feelpp_toolbox_fluid-TurekHron-cfd2-transient-CN-np-6 ................................   Passed   48.80 sec
      Start 30: feelpp_toolbox_fluid-TurekHron-cfd2-transient-CN-np-1
30/50 Test #30: feelpp_toolbox_fluid-TurekHron-cfd2-transient-CN-np-1 ................................   Passed   98.12 sec
      Start 31: feelpp_toolbox_fluid-Pipe-Pressure-Stokes-np-6
31/50 Test #31: feelpp_toolbox_fluid-Pipe-Pressure-Stokes-np-6 .......................................   Passed    4.03 sec
      Start 32: feelpp_toolbox_fluid-Pipe-Pressure-Stokes-np-1
32/50 Test #32: feelpp_toolbox_fluid-Pipe-Pressure-Stokes-np-1 .......................................   Passed    3.47 sec
      Start 33: feelpp_toolbox_fluid-Pipe-Pressure-Navier-Stokes-np-6
33/50 Test #33: feelpp_toolbox_fluid-Pipe-Pressure-Navier-Stokes-np-6 ................................   Passed    3.55 sec
      Start 34: feelpp_toolbox_fluid-Pipe-Pressure-Navier-Stokes-np-1
34/50 Test #34: feelpp_toolbox_fluid-Pipe-Pressure-Navier-Stokes-np-1 ................................   Passed    3.61 sec
      Start 35: feelpp_toolbox_solid-TurekHron-csm1-np-6
35/50 Test #35: feelpp_toolbox_solid-TurekHron-csm1-np-6 .............................................   Passed    7.23 sec
      Start 36: feelpp_toolbox_solid-TurekHron-csm1-np-1
36/50 Test #36: feelpp_toolbox_solid-TurekHron-csm1-np-1 .............................................   Passed    5.77 sec
      Start 37: feelpp_toolbox_solid-TurekHron-csm2-np-6
37/50 Test #37: feelpp_toolbox_solid-TurekHron-csm2-np-6 .............................................   Passed    7.38 sec
      Start 38: feelpp_toolbox_solid-TurekHron-csm2-np-1
38/50 Test #38: feelpp_toolbox_solid-TurekHron-csm2-np-1 .............................................   Passed    4.51 sec
      Start 39: feelpp_toolbox_hdg_poisson-quarter-turn-2d-np-6
39/50 Test #39: feelpp_toolbox_hdg_poisson-quarter-turn-2d-np-6 ......................................   Passed    6.43 sec
      Start 40: feelpp_toolbox_hdg_poisson-quarter-turn-2d-np-1
40/50 Test #40: feelpp_toolbox_hdg_poisson-quarter-turn-2d-np-1 ......................................   Passed    1.18 sec
      Start 41: feelpp_toolbox_hdg_poisson-quarter-turn-2d-int-np-6
41/50 Test #41: feelpp_toolbox_hdg_poisson-quarter-turn-2d-int-np-6 ..................................   Passed    4.53 sec
      Start 42: feelpp_toolbox_hdg_poisson-quarter-turn-2d-int-np-1
42/50 Test #42: feelpp_toolbox_hdg_poisson-quarter-turn-2d-int-np-1 ..................................   Passed    1.54 sec
      Start 43: feelpp_toolbox_hdg_poisson-quarter-turn-3d-np-6
43/50 Test #43: feelpp_toolbox_hdg_poisson-quarter-turn-3d-np-6 ......................................   Passed   12.32 sec
      Start 44: feelpp_toolbox_hdg_poisson-quarter-turn-3d-np-1
44/50 Test #44: feelpp_toolbox_hdg_poisson-quarter-turn-3d-np-1 ......................................   Passed    7.54 sec
      Start 45: feelpp_toolbox_hdg_poisson-quarter-turn-3d-int-np-6
45/50 Test #45: feelpp_toolbox_hdg_poisson-quarter-turn-3d-int-np-6 ..................................   Passed    9.67 sec
      Start 46: feelpp_toolbox_hdg_poisson-quarter-turn-3d-int-np-1
46/50 Test #46: feelpp_toolbox_hdg_poisson-quarter-turn-3d-int-np-1 ..................................   Passed   16.10 sec
      Start 47: feelpp_toolbox_heat-ThermalBridgesENISO10211_case2-np-6
47/50 Test #47: feelpp_toolbox_heat-ThermalBridgesENISO10211_case2-np-6 ..............................   Passed    2.07 sec
      Start 48: feelpp_toolbox_heat-ThermalBridgesENISO10211_case2-np-1
48/50 Test #48: feelpp_toolbox_heat-ThermalBridgesENISO10211_case2-np-1 ..............................   Passed    3.01 sec
      Start 49: feelpp_toolbox_python-tests
49/50 Test #49: feelpp_toolbox_python-tests ..........................................................   Passed   11.93 sec
      Start 50: feelpp_toolbox_python-tests-mpi
50/50 Test #50: feelpp_toolbox_python-tests-mpi ......................................................   Passed    9.14 sec

100% tests passed, 0 tests failed out of 50

Total Test time (real) = 866.54 sec

#1626

prudhomm · 2021-06-11T11:51:02Z

python tests for feelpp are here
https://buildkite.com/feelpp/feelpp/builds/3853#eef613cf-c15d-48e5-a9a3-650b55eac29c/10827-11445

prudhomm · 2021-06-14T07:17:44Z

green light @vincentchabannes @romainhild

https://buildkite.com/feelpp/feelpp/builds/3855

@thomas-saigre

@thomas-saigre [ci skip]

…into prudhomm/issue1626 [ci skip]

- python script - geo, json and cfg template - documentation of the testcase

and to see the names with the values [ci skip]

[ci skip]

…into prudhomm/issue1626

@prudhomm

/cc @prudhomm [ci skip]

…udhomm/issue1626 [ci skip]

fix compilation skip feelpp skip toolboxes

…into prudhomm/issue1626

@thomas-saigre

/cc @thomas-saigre skip feelpp

- Run the solver twice with 2 values of parameters

…into prudhomm/issue1626

- add default arg string to algebfraicFactory - fix test heat (call to_petsc in //)

prudhomm · 2021-07-16T06:34:19Z

python toolbox tests are fully operational including in parallel

The following tests passed:
        feelpp_toolbox_python-tests
        feelpp_toolbox_python-tests-mpi

100% tests passed, 0 tests failed out of 2

Total Test time (real) =  81.64 sec

- add appRepository() - add changeRepository() - c hange conftest.py, use global directory - update test to change directory for each test

the feelpp env is initialized is created twice which seems fine but then at destruction it fails [ci skip]

prudhomm added 10 commits May 31, 2021 08:00

Review, update python scripts and add tests

3aa0641

Fixes #1626

Review, update python scripts and add tests

8140bcf

Fixes #1626 remove deprecated code

Review, update python scripts and add tests #1626

68b5fa1

configure tests for pytest with fixture to configure Feel++ once for all at beginning of session

Review, update python scripts and add tests #1626

9de95d7

use ctest to launch sequential and parallel tests

move toolboxes cases in subdirectory cases fixes

942aabe

#1628

move multifluid toolbox cases in subdirectory cases #1628

b2289bb

add ModelNumerical::checkResults to python bindings

1d8f7d6

Review, update python scripts and add tests #1626

3a8ec76

various up

757265c

- copy init files to binary dir - add list of toolboxes and toolboxes_core

ignore

6ebb730

prudhomm requested review from vincentchabannes and romainhild June 4, 2021 12:52

prudhomm added 6 commits June 4, 2021 19:54

add cfpdes

fbb307d

Review, update python scripts and add tests #1626

Review, update python scripts and add tests

13a76f2

Fixes #1626

up

a0c2331

up cfpdes and hdg py toolboxes + fix cmake

1fe9ba5

#1626 and #1628

Merge remote-tracking branch 'origin/feature-toolboxmor-cfpde' into p…

07ec7d0

…rudhomm/issue1626

Merge remote-tracking branch 'origin/develop' into prudhomm/issue1626

ce0cf40

prudhomm added 3 commits June 8, 2021 19:46

move toolboxes cases in subdirectory cases #1628

37431ee

- fix hdg test cases @vincentchabannes - fix add_subdirectory for coupledpoisson @thomas-saigre @romainhild

merge with develop

a20139d

#1626 rename tests so that they are executed in buildkite

1cd34f2

prudhomm and others added 3 commits June 11, 2021 07:33

fix python toolbox test suite

93026d1

test python also in pyfeelpp

cfe17ed

#1626

rename and link config file to pyfeelpp mor

3ee9e58

fix install , rename testcase to opusheat

10a1517

@thomas-saigre [ci skip]

prudhomm and others added 15 commits June 30, 2021 05:54

Merge branch 'prudhomm/issue1626' of https://github.com/feelpp/feelpp …

e8c47fa

…into prudhomm/issue1626 [ci skip]

Merge branch 'prudhomm/issue1626' of https://github.com/feelpp/feelpp …

ec8f5e9

…into prudhomm/issue1626 [ci skip]

up case_generator

7cd4750

- python script - geo, json and cfg template - documentation of the testcase

#1626 add functions to set the values of a parameter

9512e77

and to see the names with the values [ci skip]

add const keyword and warnings in functions

4d5c568

[ci skip]

Merge branch 'prudhomm/issue1626' of https://github.com/feelpp/feelpp …

211d30e

…into prudhomm/issue1626

Merge remote-tracking branch 'origin/develop' into prudhomm/issue1626

4b6f0b8

add possibility to call the script from another directory

3229e72

/cc @prudhomm [ci skip]

Merge branch 'prudhomm/issue1626' of github.com:feelpp/feelpp into pr…

f830cef

…udhomm/issue1626 [ci skip]

FTBS mor blockVectorSolution does not exist #1659

a5ffebc

fix compilation skip feelpp skip toolboxes

Merge branch 'prudhomm/issue1626' of https://github.com/feelpp/feelpp …

ddb2e38

…into prudhomm/issue1626

move modelalgebraicfactory

2f92ce8

add to_petsc to MatrixSparse

a105fdc

simplify

b88c280

Merge remote-tracking branch 'origin/develop' into prudhomm/issue1626

066e509

prudhomm mentioned this pull request Jul 6, 2021

FTBS mor blockVectorSolution does not exist #1659

Closed

prudhomm and others added 10 commits July 7, 2021 06:30

fix compilation

85fa7b1

add to_petsc for Vectorwdouble> and test_alg in sequential for now

511d3bd

moved to modelcore

5c256d4

make sure targets exist

df55350

Add updateParametersValues method to cfpdes

3c5a50b

rm modelalg, not needed anymore

afadd41

/cc @thomas-saigre skip feelpp

Update cfpdes example

27022a0

- Run the solver twice with 2 values of parameters

Merge branch 'prudhomm/issue1626' of https://github.com/feelpp/feelpp …

d7d6432

…into prudhomm/issue1626

Review, update python scripts and add tests #1626

f58d8d7

- add default arg string to algebfraicFactory - fix test heat (call to_petsc in //)

up vscode

0546ef3

prudhomm added 2 commits July 16, 2021 08:15

improve Environment bindings:

eb8b760

- add appRepository() - add changeRepository() - c hange conftest.py, use global directory - update test to change directory for each test

fix pytest

1536df3

the feelpp env is initialized is created twice which seems fine but then at destruction it fails [ci skip]

prudhomm merged commit 7562b94 into develop Jul 17, 2021

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Prudhomm/issue1626 #1629

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Prudhomm/issue1626 #1629

Prudhomm/issue1626 #1629

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