Add rabbittclust (bioconda#47991)

* add the rabbittclust

* add the rabbittclust

* remove the make -j8

* add run_exports

* add skip osx

* Use parallel build with `make`

* Remove zlib as a run dependency since it is implicit

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com>

recipes/rabbittclust/build.sh

@@ -0,0 +1,40 @@
+#!/bin/bash
+
+export CC=${CC:-gcc}
+export CXX=${CXX:-g++}
+
+#./install.sh
+cd RabbitSketch &&
+mkdir -p build && cd build &&
+cmake -DCXXAPI=ON -DCMAKE_INSTALL_PREFIX=. .. &&
+make -j ${CPU_COUNT} && make install &&
+cd ../../ &&
+
+#make rabbitFX library
+cd RabbitFX && 
+mkdir -p build && cd build &&
+cmake -DCMAKE_INSTALL_PREFIX=. .. &&
+make -j ${CPU_COUNT} && make install && 
+cd ../../ &&
+
+#compile the clust-greedy
+mkdir -p build && cd build &&
+cmake -DUSE_RABBITFX=ON -DUSE_GREEDY=ON .. && 
+make -j ${CPU_COUNT} && make install &&
+cd ../ &&
+
+#compile the clust-mst
+cd build &&
+cmake -DUSE_RABBITFX=ON -DUSE_GREEDY=OFF .. &&
+make -j ${CPU_COUNT} && make install &&
+cd ../ 
+
+mkdir -p $PREFIX/bin
+cp clust-mst $PREFIX/bin/
+cp clust-greedy $PREFIX/bin/
+
+#export LIBRARY_DIRS="$LIBRARY_DIRS $PREFIX/lib"
+
+#make BIOCONDA=1
+#make install
+

recipes/rabbittclust/meta.yaml

@@ -0,0 +1,41 @@
+{% set version = "2.3.0" %}
+
+package:
+  name: rabbittclust
+  version: {{ version }}
+
+source:
+  url: https://github.com/RabbitBio/RabbitTClust/releases/download/v.2.3.0/RabbitTClust_avx2_v.2.3.0.tar.gz
+  sha256: f427b55c46fc4121dec33c2069a0515729bbfd08c8b787e3ef8a0ea2ced9ed4b
+
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('rabbittclust', max_pin='x.x') }}
+  # script: build.sh
+  # run_exports:
+  #   - {{ pin_subpackage("clust-mst", max_pin="x.x") }}
+  #   - {{ pin_subpackage("clust-greedy", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - cmake
+    - make
+  host:
+    - zlib 
+  run:
+
+test:
+  commands:
+    - clust-mst --help
+    - clust-greedy --help
+
+about:
+  home: https://github.com/RabbitBio/RabbitTClust
+  license: https://github.com/RabbitBio/RabbitTClust/blob/main/LICENSE.txt
+  license_file: LICENSE.txt
+  summary: RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches