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ERROR: permutation ids #71
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I have faced the same issue by using maf alignment created with SibeliaZ. |
Hi, For the maf workflow, you need to have your fasta sequence names in a form Mikhail |
Thanks Mikhaeil
My fasta file has 250 contigs. Is there any tool or script that can do this?
Regards
Ardy
On Tue, 15 Dec 2020 at 3:41 am, Mikhail Kolmogorov ***@***.***> wrote:
Hi,
For the maf workflow, you need to have your fasta sequence names in a form
genome.chromosome, where genome is the same name you are using in the
recipe file, and chromosome is any unique identifier.
Mikhail
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Ardy Kharabian-Masouleh (PhD)
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I'm not aware of any scripts, unfortunately. |
Dear Mikhaeil, |
Hi
I am trying to run Ragout using a .maf alignment file created with SibeliaZ. But I get the following error:
ERROR: An error occured while running Ragout:
ERROR: permutation ids in /ragout/results/maf-workdir/100/blocks_coords.txt do not follow naming convention: 'genome.chromosome'
Could you please explain which file should I change and how? Is there any script for that?
Regards
Ardy
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