We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
I can't seem to generate the 0_taxonomyfromtaxids.csv file from this command (I attached my two files 0.csv and 0_taxid.txt):
0_taxonomyfromtaxids.csv
0.csv
0_taxid.txt
taxit taxtable ncbi_taxonomy.db -f 0_taxid.txt -i 0.csv -o 0_taxonomyfromtaxids.csv Traceback (most recent call last): File "/space/s1/lenore/software/taxtastic/taxit.py", line 22, in <module> sys.exit(main(sys.argv[1:])) ^^^^^^^^^^^^^^^^^^ File "/space/s1/lenore/software/taxtastic/taxtastic/scripts/taxit.py", line 51, in main return action(arguments) ^^^^^^^^^^^^^^^^^ File "/space/s1/lenore/software/taxtastic/taxtastic/subcommands/taxtable.py", line 130, in action tax = Taxonomy(engine, schema=args.schema) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/space/s1/lenore/software/taxtastic/taxtastic/taxonomy.py", line 72, in __init__ self.meta.reflect() TypeError: MetaData.reflect() missing 1 required positional argument: 'bind'
0.csv 0_taxid.txt
The text was updated successfully, but these errors were encountered:
This should be fixed in v0.10.0 - please reopen or submit a new issue if you still see the error.
Sorry, something went wrong.
No branches or pull requests
I can't seem to generate the
0_taxonomyfromtaxids.csv
file from this command (I attached my two files0.csv
and0_taxid.txt
):0.csv
0_taxid.txt
The text was updated successfully, but these errors were encountered: