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4 changes: 2 additions & 2 deletions resources/collection.tsv
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Expand Up @@ -9,11 +9,11 @@ AnVIL_Book_Epigenetics_Intro https://hutchdatascience.org/AnVIL_Book_Epigenetics
AnVIL_Data_Subsetting https://hutchdatascience.org/AnVIL_Data_Subsetting/ https://github.com/fhdsl/AnVIL_Data_Subsetting Tutorial for running the fastq_subsample WDL workflow on AnVIL! anvil, course, genomics, module, wdl, wdl-workflow, workflow TRUE FALSE FALSE AnVIL: Subsetting Your Data with WDL
GDSCN_BioDIGS_Book https://hutchdatascience.org/GDSCN_BioDIGS_Book/ https://github.com/fhdsl/GDSCN_BioDIGS_Book Getting started guide for using BioDIGS data in the classroom. anvil, biodigs, course, gdscn, r-programming, tutorial TRUE TRUE FALSE GDSCN Book: BioDIGS in the Classroom
GDSCN_SARS_RStudio_on_AnVIL https://hutchdatascience.org/GDSCN_SARS_RStudio_on_AnVIL/ https://github.com/fhdsl/GDSCN_SARS_RStudio_on_AnVIL Lab module and lectures for identifying phylogenetic history of SARS variants using R anvil, course, gdscn, module, phylogenetic-analysis, sars-cov-2 TRUE TRUE FALSE GDSCN Book: SARS with RStudio on AnVIL
GDSCN_BioDIGS_Soil http://hutchdatascience.org/GDSCN_BioDIGS_Soil/ https://github.com/fhdsl/GDSCN_BioDIGS_Soil This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R. anvil, biodigs, course, gdscn, module TRUE TRUE FALSE AnVIL Book Name
BioDIGSData https://github.com/fhdsl/BioDIGSData https://github.com/fhdsl/BioDIGSData Data Package for BioDIGS Project biodigs, edtech-software, gdscn FALSE TRUE FALSE "BioDIGSData <img src=""man/hex_logo.png"" align=""right"" height=""138"" />"
GDSCN_BioDIGS_Soil http://hutchdatascience.org/GDSCN_BioDIGS_Soil/ https://github.com/fhdsl/GDSCN_BioDIGS_Soil This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R. anvil, biodigs, course, gdscn, module TRUE TRUE FALSE BioDIGS in the Classroom: Exploring Soil Data
AnVIL_Demos https://hutchdatascience.org/AnVIL_Demos/ https://github.com/fhdsl/AnVIL_Demos ⏱ 30-minute demos and tutorials from our live AnVIL series anvil, cloud, cloud-computing, course, genomics, module, research TRUE FALSE FALSE AnVIL Demos
AnVIL_SRA_Data https://hutchdatascience.org/AnVIL_SRA_Data/ https://github.com/fhdsl/AnVIL_SRA_Data Pull Sequence Read Archive (SRA) data into AnVIL anvil, course, genomics, module, ncbi-database, sequence-read-archive TRUE FALSE FALSE AnVIL: SRA Data
GDSCN_BioDIGS_AMR http://hutchdatascience.org/GDSCN_BioDIGS_AMR/ https://github.com/fhdsl/GDSCN_BioDIGS_AMR This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy. biodigs, course, gdscn, module FALSE TRUE FALSE BioDIGS in the Classroom: Investigating Antimicrobial Resistance
BioDIGSData https://github.com/fhdsl/BioDIGSData https://github.com/fhdsl/BioDIGSData Data Package for BioDIGS Project biodigs, edtech-software, gdscn FALSE TRUE FALSE BioDIGSData
GDSCN_Book_SARS_Galaxy_on_AnVIL https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnVIL/ https://github.com/jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy anvil, course, gdscn, genomics, module, sars-cov-2, variant-detection TRUE TRUE FALSE GDSCN Book: SARS with Galaxy on AnVIL
GDSCN_Book_swirl https://jhudatascience.org/GDSCN_Book_swirl/ https://github.com/jhudsl/GDSCN_Book_swirl Lab exercise: learn basic R programming through interactive swirl lessons course, gdscn, module, swirl FALSE TRUE FALSE Intro R with swirl
GDSCN_Book_Statistics_for_Genomics_Differential_Expression https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_Differential_Expression/ https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_Differential_Expression A set of lab modules for an introduction to differential gene expression anvil, cloud-computing, course, gdscn, gene-expression, genomics, module TRUE TRUE FALSE Statistics for Genomics: Differential Expression
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6 changes: 3 additions & 3 deletions resources/youtube_demos_data.csv
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Expand Up @@ -48,15 +48,15 @@ Visit DUOS: https://duos.org/
Explore AnVIL: https://anvil.terra.bio
Get started on AnVIL: https://jhudatascience.org/AnVIL_Book_Getting_Started/
Sign up for the next AnVIL Demos here: https://help.anvilproject.org/c/demos/5",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,7,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/BVmOtH04qhI/default.jpg,120,90,https://i.ytimg.com/vi/BVmOtH04qhI/mqdefault.jpg,320,180,https://i.ytimg.com/vi/BVmOtH04qhI/hqdefault.jpg,480,360,https://i.ytimg.com/vi/BVmOtH04qhI/sddefault.jpg,640,480,https://i.ytimg.com/vi/BVmOtH04qhI/maxresdefault.jpg,1280,720,youtube#video,BVmOtH04qhI,BVmOtH04qhI,2023-11-06T20:04:31Z,public
youtube#playlistItem,YSbI8iC-FWZTnqchHGvPM5R5-R4,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS40NzZCMERDMjVEN0RFRThB,2024-06-27T13:02:08Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Collecting and subsetting SRA data - 2023/12/14,"In this demo, Ava Hoffman from the Fred Hutchinson Cancer Research Center will describe how to pull data from SRA into AnVIL and use a public workflow to subset data into smaller files for analysis testing and training.
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Learn about upcoming AnVIL Demos: https://help.anvilproject.org/c/demos/5.
Find the AnVIL Book with the demo instructions to bring SRA data into AnVIL: https://hutchdatascience.org/AnVIL_SRA_Data/.
Find the AnVIL Book with the demo instructions to subset or downsample data in AnVIL: https://hutchdatascience.org/AnVIL_Data_Subsetting/.",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,8,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/yAwQKft1LS8/default.jpg,120,90,https://i.ytimg.com/vi/yAwQKft1LS8/mqdefault.jpg,320,180,https://i.ytimg.com/vi/yAwQKft1LS8/hqdefault.jpg,480,360,https://i.ytimg.com/vi/yAwQKft1LS8/sddefault.jpg,640,480,https://i.ytimg.com/vi/yAwQKft1LS8/maxresdefault.jpg,1280,720,youtube#video,yAwQKft1LS8,yAwQKft1LS8,2024-06-27T17:00:47Z,public
youtube#playlistItem,VHx-fERqHF1fRbNhswkh-yP3l2A,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS5GNjNDRDREMDQxOThCMDQ2,2024-06-27T12:56:16Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Single Cell with Bioconductor - 2024/05/23,"In this demo, Elizabeth Humphries from the Fred Hutchinson Cancer Research Center showed the Single Cell with Bioconductor activity as part of the AnVIL Demos Book: https://hutchdatascience.org/AnVIL_Demos/single-cell-with-bioconductor-overview.html.
youtube#playlistItem,5JHqAfNdYG2npuPrh07-1LHTg4M,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS5GNjNDRDREMDQxOThCMDQ2,2024-06-27T12:56:16Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: Single Cell with Bioconductor - 2024/05/23,"In this demo, Elizabeth Humphries from the Fred Hutchinson Cancer Research Center showed the Single Cell with Bioconductor activity as part of the AnVIL Demos Book: https://hutchdatascience.org/AnVIL_Demos/single-cell-with-bioconductor-overview.html.

Learn about upcoming AnVIL Demos: https://help.anvilproject.org/c/demos/5.",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,9,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/44X-m-JLPTA/default.jpg,120,90,https://i.ytimg.com/vi/44X-m-JLPTA/mqdefault.jpg,320,180,https://i.ytimg.com/vi/44X-m-JLPTA/hqdefault.jpg,480,360,https://i.ytimg.com/vi/44X-m-JLPTA/sddefault.jpg,640,480,https://i.ytimg.com/vi/44X-m-JLPTA/maxresdefault.jpg,1280,720,youtube#video,44X-m-JLPTA,44X-m-JLPTA,2024-06-27T18:00:02Z,public
youtube#playlistItem,rFaa2pr9tTKn-lDar8XCps8v6lk,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS45NDk1REZENzhEMzU5MDQz,2024-06-27T12:31:00Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: QC Analysis Pipeline from CCDG on AnVIL - 2024/06/20,"In this demo, Jason Walker from Washington University in Saint Louis presented on the NHGRI consortium Centers for Common Disease Genomics Quality Control (QC) Analysis Pipeline for WGS data available to run in AnVIL.
youtube#playlistItem,xr9qcwpzoYfPeBsj6CEusK708MY,UEw2YVlKXzB6SjR1Qzk3OEM1N1AzVGdBQWZCMzh1eTU4RS45NDk1REZENzhEMzU5MDQz,2024-06-27T12:31:00Z,UCBbHCj7kUogAMFyBAzzzfUw,AnVIL Demos: QC Analysis Pipeline from CCDG on AnVIL - 2024/06/20,"In this demo, Jason Walker from Washington University in Saint Louis presented on the NHGRI consortium Centers for Common Disease Genomics Quality Control (QC) Analysis Pipeline for WGS data available to run in AnVIL.

Learn more about upcoming AnVIL Demos: https://help.anvilproject.org/c/demos/5.
Find the Github Repository for the qc-analysis-pipeline: https://github.com/genome/qc-analysis-pipeline.",AnVIL Project,PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E,10,AnVIL Project,UCBbHCj7kUogAMFyBAzzzfUw,https://i.ytimg.com/vi/IB3c-6UpocI/default.jpg,120,90,https://i.ytimg.com/vi/IB3c-6UpocI/mqdefault.jpg,320,180,https://i.ytimg.com/vi/IB3c-6UpocI/hqdefault.jpg,480,360,https://i.ytimg.com/vi/IB3c-6UpocI/sddefault.jpg,640,480,https://i.ytimg.com/vi/IB3c-6UpocI/maxresdefault.jpg,1280,720,youtube#video,IB3c-6UpocI,IB3c-6UpocI,2024-06-28T08:17:12Z,public
2 changes: 1 addition & 1 deletion resources/youtube_metadata.csv
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playlist_id,view_count,sub_count,vid_count
UUBbHCj7kUogAMFyBAzzzfUw,5047,104,56
UUBbHCj7kUogAMFyBAzzzfUw,5086,104,56

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