Analyze Leed Pattern

Summary

卒業研究におけるプロジェクトです。

LEEDと呼ばれる電子線回折装置を用いて撮影された画像から、スポットを自動で検出し、解析を行います。

Install

git clone git@github.com:fhiroki/analyze-leed-pattern.git
cd analyze-leed-pattern
pip install -e .

Commands

usage: leed [-h] [--version] {detect-spots,calc-distortion,plot-spots} ...

analyze leed pattern

positional arguments:
  {detect-spots,calc-distortion,plot-spots}
    detect-spots        see `-h`
    calc-distortion     see `-h`
    plot-spots          see `-h`

optional arguments:
  -h, --help            show this help message and exit
  --version             show program's version number and exit

detect-spots

usage: leed detect-spots [-h] --input-image-path INPUT_IMAGE_PATH [--output-image-path OUTPUT_IMAGE_PATH]

optional arguments:
  -h, --help            show this help message and exit
  --input-image-path INPUT_IMAGE_PATH
                        input image path
  --output-image-path OUTPUT_IMAGE_PATH
                        output image path

ex) detect-spots --input-image-path images/L16501.tif --output-image-path output/images/L16501_detected.tif

calc-distortion

usage: leed calc-distortion [-h] --input-images-dir INPUT_IMAGES_DIR --input-voltages-path INPUT_VOLTAGES_PATH --kind {Au,Ag,Cu} --surface
                            {110,111} [--isplot] [--output-image-path OUTPUT_IMAGE_PATH] [--manual-r MANUAL_R]

optional arguments:
  -h, --help            show this help message and exit
  --input-images-dir INPUT_IMAGES_DIR
                        input images directory
  --input-voltages-path INPUT_VOLTAGES_PATH
                        input image, beam voltage csv file
  --kind {Au,Ag,Cu}     base type
  --surface {110,111}   base surface
  --isplot              draw a scatter plot of sinθ and X
  --output-image-path OUTPUT_IMAGE_PATH
                        output plot image path
  --manual-r MANUAL_R   calculated r by myself

ex) calc-distortion --kind Ag --surface 111 --input-images-dir image/Ag111/ --input-voltages-path voltages.csv --isplot --output-image_path
output/distortion.png

plot-spots

usage: leed plot-spots [-h] --input-images-dir INPUT_IMAGES_DIR --input-voltages-path INPUT_VOLTAGES_PATH [--rprime RPRIME]
                       [--output-image-path OUTPUT_IMAGE_PATH]

optional arguments:
  -h, --help            show this help message and exit
  --input-images-dir INPUT_IMAGES_DIR
                        input images directory
  --input-voltages-path INPUT_VOLTAGES_PATH
                        input image, beam voltage csv file
  --rprime RPRIME       calculated rprime by calc-rprime
  --output-image-path OUTPUT_IMAGE_PATH
                        output plot image path

ex) plot-spots --input-images-dir images/Coronene/ --input-voltages-path voltages.csv --output-image-path output/spots.png