Gauss fit redux #198
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Gauss fit redux #198
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Use the Commones-Math optimizers now.
- Include the 3D case. - Notifies model listeners after undo and fit.
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Rework the spot fitting action. It is now based on Apache commons-math optimizers.
The TrackMate action "Refine spot position with gaussian fitting" now launches a small UI to tune spot fitting:
There, the user can choose
In 2D we use a circular gaussian. In 3D, the sigma in XY and Z can be different. But the spot radius is always determined from the fitted value of sigmaXY.
The buttons at the bottom allows choosing whether to fit
There is an undo button, that undoes the last performed fit (but no more).
The features are recalculated after the fit, and the listeners of the model are notified as well.