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@fiji @scijava @imagej @trackmate-sc
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BioImage Analyst and Core Facility manager @ Institut Pasteur, Paris

With minuscule exceptions, all the code I make is about scientific image analysis and data analysis.


Top Langs

tinevez' GitHub stats

Maintainer and author (with excellent friends and colleagues) of:

Mastodon (The scientific software for tracking cells and lineaging in large microscopy images, not the social network.)

TrackMate (code)

MaMuT (code)




Popular repositories

  1. matlab-tree matlab-tree Public

    A MATLAB class to represent the tree data structure.

    MATLAB 47 35

  2. msdanalyzer msdanalyzer Public

    A MATLAB class for Mean Square Displacement analysis.

    MATLAB 36 16

  3. simpletracker simpletracker Public

    A simple particle tracking algorithm for MATLAB that can deal with gaps.

    MATLAB 17 5

  4. latex-auto-template latex-auto-template Public template

    Template repo made for elaborating LaTeX documents that are automatically compiled and published with github actions.

    TeX 5 1

  5. imglib2-icy imglib2-icy Public

    imglib2-icy ImgLib2 wrappers for Icy.

    Java 3 2

  6. TrackMate-TrackAnalysis TrackMate-TrackAnalysis Public archive

    Basic track analysis, plugged as TrackMate modules.

    Java 2 3