copytoImgPlus.m does not work

[kouichi-c-nakamura]

scripts/copytoImgPlus.m does not work

In the following line, the code is trying to convert ArrayImg to ImgPlus, but it seems that there is no ImgPlus class in imglib2 any longer. I could not find an equivalent either.

fiji/scripts/copytoImgPlus.m

Line 136 in e282445

imgplus = net.imglib2.img.ImgPlus(img, name, ax, calibration);

Does anyone know a way to fix this?

[imagejan]

It should be net.imagej.ImgPlus from imagej-common.

[kouichi-c-nakamura]

Fixed as below:

imgplus = net.imagej.ImgPlus(img, name, ax, calibration);

Issued an error:

No constructor 'net.imagej.ImgPlus' with matching signature found.
Error in copytoImgPlus (line 136)
imgplus = net.imagej.ImgPlus(img, name, ax, calibration); 

However net.imagej.ImgPlus(img, name) works fine.

ax is supposed to be AxisType[] and it looks like AxisType[]:

ax =
  net.imglib2.meta.DefaultAxisType[]:
    [net.imglib2.meta.DefaultAxisType]
    [net.imglib2.meta.DefaultAxisType]
    [net.imglib2.meta.DefaultAxisType]
    [net.imglib2.meta.DefaultAxisType]
    [net.imglib2.meta.DefaultAxisType]

I wonder why it's been rejected. Any idea, please?

[imagejan]

The axes should be using the net.imagej.axis.AxisType interface now.

fiji/scripts/copytoImgPlus.m

Lines 53 to 58 in c73992f

	MATCHING_AXES = [
	net.imglib2.meta.Axes.X
	net.imglib2.meta.Axes.Y
	net.imglib2.meta.Axes.Z
	net.imglib2.meta.Axes.TIME
	net.imglib2.meta.Axes.CHANNEL ];

And these should accordingly be net.imagej.axis.Axes.X etc.

[kouichi-c-nakamura]

PR created
#200