This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.
Updated May 25, 2015
Updated May 23, 2015
Fiji library to perform image segmentation based on the Weka learning schemes
Updated May 18, 2015
ImageJ/Fiji plugin to skeletonize binary images
Fiji plugin based on the SIOX project to segment color images
ImageJ/Fiji plugin for consistent elastic registration of 2D images
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
A set of tools intended to help with time-lapse data
Updated May 13, 2015
An aggregator for Fiji Javadocs
Updated May 11, 2015
Configuration files for Fiji resources.
Updated May 9, 2015
The parent project for all Fiji projects
Updated May 8, 2015
Fiji Is Just ImageJ. ***WARNING*** this repository is intended for *developers*! If you want to *use* Fiji, please download it from: http://fiji.sc/Downloads
Updated May 6, 2015
A bunch of useful profilers based on Javassist (http://javassist.org/)
Updated Apr 29, 2015
OBSOLETE; see https://github.com/imglib/imglib2
forked from berl/Vaa3d_Writer
Vaa3d writer plugin for ImageJ 1.x
A simple repository that shows how to extend TrackMate with your own modules.
TrackMate is your buddy for your everyday tracking.