This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.
A "batteries-included" distribution of ImageJ
Fiji's Stitching plugins reconstruct big images from tiled input images.
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
The parent project for all Fiji projects
ImageJ/Fiji plugin to skeletonize binary images
Configuration files for Fiji resources.
A plugin to extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).
ImageJ/Fiji plugin for consistent elastic registration of 2D images
Fiji library to perform image segmentation based on the Weka learning schemes
Fiji package for registering and transforming arbitrarily large sequences of images
Bio-medical imaging in Java