This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.
Fiji library to perform image segmentation based on the Weka learning schemes
A "batteries-included" distribution of ImageJ
An aggregator for Fiji Javadocs
Fiji package for registering and transforming arbitrarily large sequences of images
TensorFlow-based classifier for microscope image focus quality.
TrackMate is your buddy for your everyday tracking.
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161
OBSOLETE; see https://github.com/imglib/imglib2
Configuration files for Fiji resources
Plugins collated for the Fiji Cookbook
Bio-medical imaging in Java
ImageJ/Fiji plugin for consistent elastic registration of 2D images
Vaa3d writer plugin for ImageJ 1.x