@fiji

Fiji

A "batteries included" distribution of ImageJ for scientific image analysis

Pinned repositories

  1. fiji

    A "batteries-included" distribution of ImageJ ๐Ÿ”‹

    Shell 185 154

  2. cookbook

    Plugins collated for the Fiji Cookbook

    Java 5 2

  • This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.

    Java 9 Updated Nov 15, 2017
  • Fiji library to perform image segmentation based on the Weka learning schemes

    Java 25 24 Updated Nov 14, 2017
  • A "batteries-included" distribution of ImageJ ๐Ÿ”‹

    Shell 185 154 Updated Nov 11, 2017
  • An aggregator for Fiji Javadocs

    Shell 1 Updated Nov 9, 2017
  • Fiji package for registering and transforming arbitrarily large sequences of images

    Java 5 6 Updated Nov 6, 2017
  • TensorFlow-based classifier for microscope image focus quality.

    Java 2 1 Apache-2.0 Updated Nov 1, 2017
  • TrackMate is your buddy for your everyday tracking.

    Java 26 31 Updated Oct 30, 2017
  • Java 16 Updated Oct 27, 2017
  • Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    Java 15 20 GPL-2.0 Updated Oct 17, 2017
  • Python 2 1 GPL-3.0 Updated Oct 11, 2017
  • Java 1 Updated Oct 5, 2017
  • Java 4 8 GPL-3.0 Updated Oct 5, 2017
  • A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161

    Java Updated Oct 5, 2017
  • Java 1 Updated Oct 5, 2017
  • Java 2 4 Updated Oct 5, 2017
  • Java Updated Oct 5, 2017
  • Java 3 1 Updated Oct 5, 2017
  • Java Updated Oct 5, 2017
  • Java 2 GPL-3.0 Updated Oct 5, 2017
  • Java 1 1 Updated Oct 5, 2017
  • Configuration files for Fiji resources

    Updated Oct 5, 2017
  • Plugins collated for the Fiji Cookbook

    Java 5 2 GPL-3.0 Updated Oct 5, 2017
  • Java 3 Updated Oct 5, 2017
  • Bio-medical imaging in Java

    Java Updated Oct 5, 2017
  • ImageJ/Fiji plugin for consistent elastic registration of 2D images

    Java 7 5 Updated Oct 5, 2017
  • Java 3 Updated Oct 5, 2017
  • Java 1 4 Updated Oct 5, 2017
  • Java Updated Oct 5, 2017
  • Java 1 Updated Oct 5, 2017
  • Vaa3d writer plugin for ImageJ 1.x

    Java 26 Updated Oct 5, 2017