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new script: pmid file --> csv output #5

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firaswehbe opened this issue Nov 13, 2015 · 1 comment
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new script: pmid file --> csv output #5

firaswehbe opened this issue Nov 13, 2015 · 1 comment
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@firaswehbe
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scripts/pmid2csv.py

Simple script that reads a pmid file and generates a csv file.

Requires 2 arguments: input pmid file name, output csv file name

Initial operation description:

  • Use epost
  • Call non-paginated esummary (try to break in testing)
  • Fail if output file exists
@firaswehbe
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Does a read, not a parse. So all of it is loaded in memory then transferred to the pandas frame

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