eutilsutils

Utilities for Entrez E-Utilities based on BioPython.

Notebooks

Some explanation of how to run BioPython and some of the code written in this repo will be demonstrated in Jupyter Notebooks which can be viewed here.

Scripts

The scripts directory will have some general utility scripts for testing the code or to demonstrate the functionality.

Installation and Running

Before first use:

1. Download and install Conda (Anaconda or Miniconda).
2. Clone this repo
3. Create a conda environment with the required dependencies.

$ conda create --name eutilsutils --file config/eutilsutils.yml

Before running the scripts:

Make sure you activate the conda environment

$ conda activate eutilsutils