Trying to remove asbio suggests

fishR-Core-Team · Jul 25, 2019 · 59523a6 · 59523a6
1 parent c133f39
commit 59523a6
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Showing 4 changed files with 2 additions and 12 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -35,7 +35,6 @@ Imports:
     sciplot,
     withr
 Suggests:
-    asbio,
     DescTools,
     fishmethods,
     FSAdata,

diff --git a/R/dunnTest.R b/R/dunnTest.R
@@ -12,7 +12,7 @@
 #' 
 #' The results from \code{DunnTest} match the results (in a different format) from the \code{\link[dunn.test]{dunn.test}} function from \pkg{dunn.test}.
 #' 
-#' The \code{\link[asbio]{pairw.kw}} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{\link[asbio]{pairw.kw}} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{\link[asbio]{pairw.kw}}.
+#' The \code{pairw.kw} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{pairw.kw} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{pairw.kw}.
 #' 
 #' The \code{\link[PMCMR]{posthoc.kruskal.nemenyi.test}} function from the \pkg{PMCMR} package uses the \dQuote{Nemenyi} (1963) method of multiple comparisons.
 #' 

diff --git a/man/dunnTest.Rd b/man/dunnTest.Rd
diff --git a/tests/testthat/testthat_dunnTest.R b/tests/testthat/testthat_dunnTest.R
@@ -152,12 +152,3 @@ test_that("dunnTest matches dunn.test results for airquality data",{
     }
   } # end require()
 })
-
-test_that("dunnTest matches pairw.kw results",{
-  if (require(asbio)) {
-    ## unadjusted p-values
-    tmp  <- dunnTest(pH~fpond,data=ponds,method="bonferroni")$res$P.adj
-    tmp2 <- fact2num(pairw.kw(ponds$pH,ponds$fpond)$summary$'Adj. P-value')
-    expect_equivalent(round(tmp,6),tmp2)    
-  } # end require()
-})