prep for 2.5.0rc2

flexcompute · Oct 30, 2023 · 1c9dd24 · 1c9dd24
1 parent 1e5d85e
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,25 +3,25 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+## [2.5.0rc2] - 2023-10-30
 
 ### Added
 - Support for multiple frequencies in `output_monitors` in `adjoint` plugin.
-- GDSII export functions to `Simulation`, `Structure`, and `Geometry`.
-- ``verbose`` argument to `estimate_cost` and `real_cost` functions such that the cost is logged if `verbose==True` (default). Additional helpful messages may also be logged.
-- Added support for space-time modulation of permittivity and electric conductivity via `ModulationSpec` class. The modulation function must be separable in space and time. Modulations with user-supplied distributions in space and harmonic modulation in time are supported.
-- `Geometry.intersections_tilted_plane` calculates intesections with any plane, not only axis-aligned ones.
-- `Transformed` class to support for geometry transformations.
+- GDSII export functions `to_gds_file`, `to_gds`, `to_gdspy`, and `to_gdstk` to `Simulation`, `Structure`, and `Geometry`.
+- `verbose` argument to `estimate_cost` and `real_cost` functions such that the cost is logged if `verbose==True` (default). Additional helpful messages may also be logged.
+- Support for space-time modulation of permittivity and electric conductivity via `ModulationSpec` class. The modulation function must be separable in space and time. Modulations with user-supplied distributions in space and harmonic modulation in time are supported.
+- `Geometry.intersections_tilted_plane` calculates intersections with any plane, not only axis-aligned ones.
+- `Transformed` class to support geometry transformations.
 - Methods `Geometry.translated`, `Geometry.scaled`, and `Geometry.rotated` can be used to create transformed copies of any geometry.
 
 ### Changed
-- Update versions of `boto3`, `requests`, and `click`.
+- Updated versions of `boto3`, `requests`, and `click`.
 - python 3.7 no longer tested nor supported.
-- Remove warning that monitors now have `colocate=True` by default.
+- Removed warning that monitors now have `colocate=True` by default.
 - If `PML` or any absorbing boundary condition is used along a direction where the `Simulation` size is zero, an error will be raised, rather than just a warning.
 
 ### Fixed
-- If no adjoint sources for one simulation in an objective function, make a mock source with zero amplitude and warn user.
+- If there are no adjoint sources for a simulation involved in an objective function, make a mock source with zero amplitude and warn user.
 
 ## [2.5.0rc1] - 2023-10-10
 
@@ -1003,7 +1003,8 @@ which fields are to be projected is now determined automatically based on the me
 - Job and Batch classes for better simulation handling (eventually to fully replace webapi functions).
 - A large number of small improvements and bug fixes.
 
-[Unreleased]: https://github.com/flexcompute/tidy3d/compare/v2.5.0rc1...pre/2.5
+[Unreleased]: https://github.com/flexcompute/tidy3d/compare/v2.5.0rc2...pre/2.5
+[2.5.0rc2]: https://github.com/flexcompute/tidy3d/compare/v2.5.0rc1...v2.5.0rc2
 [2.5.0rc1]: https://github.com/flexcompute/tidy3d/compare/v2.4.2...v2.5.0rc1
 [Unreleased]: https://github.com/flexcompute/tidy3d/compare/v2.4.3...develop
 [2.4.3]: https://github.com/flexcompute/tidy3d/compare/v2.4.2...v2.4.3

diff --git a/tests/sims/simulation_2_5_0rc2.h5 b/tests/sims/simulation_2_5_0rc2.h5
diff --git a/tests/sims/simulation_2_5_0rc2.json b/tests/sims/simulation_2_5_0rc2.json
@@ -10,7 +10,6 @@
         8.0,
         8.0
     ],
-    "run_time": 1e-12,
     "medium": {
         "name": null,
         "frequency_range": null,
@@ -22,11 +21,6 @@
         "permittivity": 1.0,
         "conductivity": 0.0
     },
-    "symmetry": [
-        0,
-        0,
-        0
-    ],
     "structures": [
         {
             "geometry": {
@@ -902,8 +896,14 @@
             }
         }
     ],
+    "symmetry": [
+        0,
+        0,
+        0
+    ],
     "sources": [
         {
+            "name": null,
             "type": "UniformCurrentSource",
             "center": [
                 0.0,
@@ -924,11 +924,11 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "interpolate": true,
             "polarization": "Hx"
         },
         {
+            "name": null,
             "type": "PointDipole",
             "center": [
                 0.0,
@@ -949,11 +949,11 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "interpolate": true,
             "polarization": "Ex"
         },
         {
+            "name": null,
             "type": "ModeSource",
             "center": [
                 0.0,
@@ -974,7 +974,6 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "num_freqs": 1,
             "direction": "-",
             "mode_spec": {
@@ -997,6 +996,7 @@
             "mode_index": 0
         },
         {
+            "name": null,
             "type": "PlaneWave",
             "center": [
                 0.0,
@@ -1017,13 +1017,13 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "direction": "+",
             "angle_theta": 0.0,
             "angle_phi": 0.0,
             "pol_angle": 0.1
         },
         {
+            "name": null,
             "type": "GaussianBeam",
             "center": [
                 0.0,
@@ -1044,7 +1044,6 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "num_freqs": 1,
             "direction": "+",
             "angle_theta": 0.0,
@@ -1054,6 +1053,7 @@
             "waist_distance": 0.0
         },
         {
+            "name": null,
             "type": "AstigmaticGaussianBeam",
             "center": [
                 0.0,
@@ -1074,7 +1074,6 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "num_freqs": 1,
             "direction": "+",
             "angle_theta": 0.0,
@@ -1090,6 +1089,7 @@
             ]
         },
         {
+            "name": null,
             "type": "CustomFieldSource",
             "center": [
                 0.0,
@@ -1110,7 +1110,6 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "field_dataset": {
                 "type": "FieldDataset",
                 "Ex": "ScalarFieldDataArray",
@@ -1122,6 +1121,7 @@
             }
         },
         {
+            "name": null,
             "type": "CustomCurrentSource",
             "center": [
                 0.0,
@@ -1142,7 +1142,6 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "interpolate": true,
             "current_dataset": {
                 "type": "FieldDataset",
@@ -1155,6 +1154,7 @@
             }
         },
         {
+            "name": null,
             "type": "TFSF",
             "center": [
                 1.0,
@@ -1175,14 +1175,14 @@
                 "offset": 5.0,
                 "remove_dc_component": true
             },
-            "name": null,
             "direction": "+",
             "angle_theta": 0.5235987755982988,
             "angle_phi": 0.6283185307179586,
             "pol_angle": 0.0,
             "injection_axis": 2
         },
         {
+            "name": null,
             "type": "UniformCurrentSource",
             "center": [
                 0.0,
@@ -1206,7 +1206,6 @@
                     "values": "TimeDataArray"
                 }
             },
-            "name": null,
             "interpolate": true,
             "polarization": "Hx"
         }
@@ -2091,9 +2090,10 @@
         ],
         "type": "GridSpec"
     },
+    "version": "2.5.0rc2",
+    "run_time": 1e-12,
     "shutoff": 0.0001,
     "subpixel": false,
     "normalize_index": 0,
-    "courant": 0.8,
-    "version": "2.5.0rc2"
+    "courant": 0.8
 }
diff --git a/tidy3d/components/geometry/base.py b/tidy3d/components/geometry/base.py
@@ -2189,7 +2189,7 @@ class Transformed(Geometry):
     )
 
     transform: MatrixReal4x4 = pydantic.Field(
-        np.eye(4),
+        np.eye(4).tolist(),
         title="Transform",
         description="Transform matrix applied to the base geometry.",
     )