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hotfix(images): Fixed bad image URLS.
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The-Scott-Flinders committed Jun 16, 2020
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14 changes: 7 additions & 7 deletions docs/source/Access/GettingAccess.md
Original file line number Diff line number Diff line change
Expand Up @@ -26,13 +26,13 @@ The simplest manner is to open up a terminal window and type in the following, s

If all is OK it will ask for your password. Enter the same password you use to login to OKTA.

![SSHPasswordPrompt](../../_static/shellPasswordPromtImage.png)
![](../_static/shellPasswordPromtImage.png)

##### Success

Upon a successful login, you should get a screen similar to this:

![LoginOK](../../_static/loginOKImage.png)
![](../_static/loginOKImage.png)

If so, you are now connected and ready to start using the HPC!

Expand All @@ -44,7 +44,7 @@ If you wish to setup password-less login via SSH Keys, you may do so.

To connect to Deep Thought a SSH application such as PuTTy is required. Below is a short list of the possible programs you can use as a client to connect to the HPC. This guide will focus on Putty - but will be equally applicable to the other programs.

#### The Windows Sub-System for Linux
#### The Windows Sub-System for Linux (WSL)

If you are using the Windows SubSystem for Linux (WSL), then go ahead and read the [Unix/Linux](#unix-linux-macos) instructions instead.

Expand All @@ -54,7 +54,7 @@ If you are using the Windows SubSystem for Linux (WSL), then go ahead and read t
- [KiTTY](http://www.9bis.net/kitty/#!pages/download.md)
- [BitVise Client](https://www.bitvise.com/download-area)

#### Getting Connected
#### Getting Connected on Windows

Open PuTTy, and you are presented with this screen:

Expand All @@ -76,14 +76,14 @@ If all has gone well, you will be presented with this screen:

These are the same credentials you use to login to OKTA.

#### Success
#### Successful Login

Upon a successful login, you should get a screen similar to this:

![](../../_static/loginOKImage.png)

If so, you are now connected and ready to start using the HPC!

#### SSH Keys
#### SSH Keys on Windows

As with the Unix/Linux/MacOS system, you may also setup SSH Keys for password-less logins. Be sure to follow the specific instructions for your client, as they will differ!
As with the Unix/Linux/MacOS system, you may also setup SSH Keys for password-less logins. Be sure to follow the specific instructions for your client, as they will differ!
12 changes: 6 additions & 6 deletions docs/source/FileTransfers/FileTransfersIntro.md
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Expand Up @@ -59,7 +59,7 @@ To upload files to DeepThought, the simplest method is to open a Terminal window
Substitute your filename, FAN and Password, type scp FILENAME FAN@deepthought.flinders.edu.au:/home/FAN then hit enter.
Enter your password when prompted. This will put the file in your home directory on DeepThought. It looks (when substituted accordingly) similar to:

![SCPExample](../../_static/SCPExampleImage.png)
![](../_static/SCPExampleImage.png)

#### The Longer Version

Expand All @@ -74,7 +74,7 @@ If you know the hostname of the computer, you can substitute this to transfer fi

The command will take this form:

![SCPByHostname](../../_static/SCPByHostname.png)
![](../_static/SCPByHostname.png)

#### Transfer By IP Address

Expand All @@ -85,7 +85,7 @@ If you don't know your computer IP, then the commands of:

Will be your friend to figure out what it is. Just like above, we slightly change the command, and sub-in an IP instead of a host-name.

![SCPByIp](../../_static/SCPByIp.png)
![](../_static/SCPByIp.png)

### Windows

Expand All @@ -108,12 +108,12 @@ This guide will focus on WinSCP.

Open WinSCP, enter deepthought.flinders.edu.au as the host to connect to, and click Login. You should have a screen that looks like this.

![WinSCPConnect](../../_static/WinSCPImage.png)
![](../../_static/WinSCPImage.png)

The first time you connect up you will get a warning - this is fine, just click YES to continue on.

![WinSCPSSHKeyNotice](../../_static/WinSCPSSHKeyNotice.png)
![](../_static/WinSCPSSHKeyNotice.png)

A connection to Deep Thought will then be created - login using your FAN and password. If all goes well, you will be treated to this screen:

![WinSCPConnected](../../_static/WinSCPConnected.png)
![](../_static/WinSCPConnected.png)
5 changes: 3 additions & 2 deletions docs/source/ModuleSystem/LMod.md
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Expand Up @@ -70,7 +70,7 @@ There is also a nice shortcut, that you can use:

'ml' is just short for 'module load'. Handy!

## Additional Software
## Additional Software & Modules

Generally speaking, we can install almost all Linux/CentOS bounded software/applications on HPC, but we don't always need to go thorough the effort to install things 'globally' for everybody.

Expand All @@ -92,4 +92,5 @@ Be warned, that this is a _long_ list. It's updated on best effort basis to help
This is the list of software that has been 'hand rolled' as it contains either things that at that time, did not have an automated way of installation, or rather esoteric software that required extensive modification to work correctly on the HPC. It is available [here](ManuallyInstalled.md)

### Additional Software
There are additional software collections will be made available in a near future.

There are additional software collections will be made available in a near future.
4 changes: 2 additions & 2 deletions docs/source/SLURM/SLURMIntro.md
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Expand Up @@ -32,15 +32,15 @@ At any point, you can check the 'live' priority scores of user accounts via the

Which will print something resembling this table:

![SprioImage](../_static/SPRIOExampleImage.png)
![](../_static/SPRIOExampleImage.png)

If you want to interrogate even more data, you can explore the command:

sshare

Which will allow for greater details of how your score was calculated.

![SShareImage](../_static/SSHAREExampleImage.png)
![](../_static/SSHAREExampleImage.png)

### Calculating Priority

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